miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 95855 0.68 0.834159
Target:  5'- gGGGGCGG-CGUCcUCCcagggccgcGCGCCGAgGa -3'
miRNA:   3'- gCUCCGCCgGCAGaAGG---------UGUGGCUgU- -5'
8985 3' -58.5 NC_002512.2 + 95950 0.66 0.903745
Target:  5'- gGAcGCgGGCCGUCgggCCGcCGCCGuACAg -3'
miRNA:   3'- gCUcCG-CCGGCAGaa-GGU-GUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 96200 0.75 0.446546
Target:  5'- gGAGGCGGCCGcgaggUCggCCACGgCGGCc -3'
miRNA:   3'- gCUCCGCCGGC-----AGaaGGUGUgGCUGu -5'
8985 3' -58.5 NC_002512.2 + 96268 0.69 0.784125
Target:  5'- aCGAGGCGacgaucgaGCCGUaggUCCGCaggagGCCGGCc -3'
miRNA:   3'- -GCUCCGC--------CGGCAga-AGGUG-----UGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 96508 0.67 0.878246
Target:  5'- -cGGGCGaccGCCGgagggagCCGCGCCGGCGg -3'
miRNA:   3'- gcUCCGC---CGGCagaa---GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 96632 0.66 0.909599
Target:  5'- --cGGCGGCa-UCUUCCcCGCCGGg- -3'
miRNA:   3'- gcuCCGCCGgcAGAAGGuGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 98010 0.67 0.864292
Target:  5'- aCGugcuGGUGGCCGUCcugaUCCGC-CgCGGCGu -3'
miRNA:   3'- -GCu---CCGCCGGCAGa---AGGUGuG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 98128 0.67 0.849582
Target:  5'- cCGGGGCgcuGGUCGUCgcggCCGCccgccCCGGCGg -3'
miRNA:   3'- -GCUCCG---CCGGCAGaa--GGUGu----GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 98348 0.67 0.878246
Target:  5'- gGGGGCGGCCccuccgccucGUCUcCCu--CCGGCGu -3'
miRNA:   3'- gCUCCGCCGG----------CAGAaGGuguGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 98583 0.67 0.857029
Target:  5'- -cGGGCGGCgGgUCgUCCGCGCUGcACGu -3'
miRNA:   3'- gcUCCGCCGgC-AGaAGGUGUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 98682 0.68 0.837299
Target:  5'- uCGAGcGCcuGGCCGcgcacgacuacgcgcUCUUCCACugCGAgAa -3'
miRNA:   3'- -GCUC-CG--CCGGC---------------AGAAGGUGugGCUgU- -5'
8985 3' -58.5 NC_002512.2 + 99109 0.67 0.857029
Target:  5'- --cGGCGGCCcuccUCguggUCCGCGCCGcgGCGa -3'
miRNA:   3'- gcuCCGCCGGc---AGa---AGGUGUGGC--UGU- -5'
8985 3' -58.5 NC_002512.2 + 99409 0.67 0.841957
Target:  5'- cCGGGGCGGCuuCGUCU-CCGCcCCcGCu -3'
miRNA:   3'- -GCUCCGCCG--GCAGAaGGUGuGGcUGu -5'
8985 3' -58.5 NC_002512.2 + 100500 0.68 0.834159
Target:  5'- gGAGGCcgcGGUCGUCgagcacCCGCACgaGACAg -3'
miRNA:   3'- gCUCCG---CCGGCAGaa----GGUGUGg-CUGU- -5'
8985 3' -58.5 NC_002512.2 + 101607 0.75 0.412679
Target:  5'- -cGGGCGGCCGUCggCCcgGCGCCGGg- -3'
miRNA:   3'- gcUCCGCCGGCAGaaGG--UGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 101656 0.68 0.834159
Target:  5'- gCGcGGCGGCCG-CggacgCCGgGCCGAUc -3'
miRNA:   3'- -GCuCCGCCGGCaGaa---GGUgUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 101913 0.71 0.623881
Target:  5'- gGGGGCGGCgUGUUcUCCAUgcggggACCGACGg -3'
miRNA:   3'- gCUCCGCCG-GCAGaAGGUG------UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 103219 0.68 0.818073
Target:  5'- cCGAGGCGGCucgCGUCg-CCGCccgUCGACGg -3'
miRNA:   3'- -GCUCCGCCG---GCAGaaGGUGu--GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 103441 0.7 0.710811
Target:  5'- -aAGGCGGCCG-CcgCCGuCGCCGGCc -3'
miRNA:   3'- gcUCCGCCGGCaGaaGGU-GUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 105617 0.67 0.864292
Target:  5'- cCGAGGCaccGGCCGUCgucggucUCCGagacCCGGCc -3'
miRNA:   3'- -GCUCCG---CCGGCAGa------AGGUgu--GGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.