miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 107876 0.66 0.89768
Target:  5'- gGAGGCcgucgucaccuuGGCCGccgcgaUCUUCCucucguccCGCCGGCGg -3'
miRNA:   3'- gCUCCG------------CCGGC------AGAAGGu-------GUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 108195 0.66 0.884927
Target:  5'- -aGGGCGGCCacGUC-UCCuauGCACuCGGCGg -3'
miRNA:   3'- gcUCCGCCGG--CAGaAGG---UGUG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 108460 0.69 0.748205
Target:  5'- cCGGGGCcgacuccgcGGgCGUCUcccUCCACGCCaGGCGc -3'
miRNA:   3'- -GCUCCG---------CCgGCAGA---AGGUGUGG-CUGU- -5'
8985 3' -58.5 NC_002512.2 + 108655 0.69 0.748205
Target:  5'- aCGGGGCGGUCcacauGUacUCCcCGCCGACGa -3'
miRNA:   3'- -GCUCCGCCGG-----CAgaAGGuGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 112149 0.66 0.89768
Target:  5'- aCGAGGCGGUCGaCggCga-GCCGGCGc -3'
miRNA:   3'- -GCUCCGCCGGCaGaaGgugUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 113269 0.67 0.857029
Target:  5'- gGGGGCGGCCGgcggggCagCCGCGgCGGg- -3'
miRNA:   3'- gCUCCGCCGGCa-----GaaGGUGUgGCUgu -5'
8985 3' -58.5 NC_002512.2 + 113339 0.67 0.864292
Target:  5'- -cAGGCGGCCGUUcaUCCccaGCAgCUGGCAc -3'
miRNA:   3'- gcUCCGCCGGCAGa-AGG---UGU-GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 113920 0.66 0.909599
Target:  5'- aCGAGGCGGaCGU--UCCAC-UCGGCc -3'
miRNA:   3'- -GCUCCGCCgGCAgaAGGUGuGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 115773 0.67 0.871366
Target:  5'- --cGGUGGCCGUgcCgugCUACugCGACGa -3'
miRNA:   3'- gcuCCGCCGGCA--Gaa-GGUGugGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 116672 0.67 0.841957
Target:  5'- uCGuGGCGGaCCG-CgagCCGCugGCCGACGc -3'
miRNA:   3'- -GCuCCGCC-GGCaGaa-GGUG--UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 117407 0.66 0.891407
Target:  5'- uCGAGGaccaGGgCGUCaUCCGCuCCGAg- -3'
miRNA:   3'- -GCUCCg---CCgGCAGaAGGUGuGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 118077 0.68 0.826196
Target:  5'- gGAGGgGGCgG-CUcCgGCGCCGGCGg -3'
miRNA:   3'- gCUCCgCCGgCaGAaGgUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 118591 0.7 0.701292
Target:  5'- gCGAucGGCGGCCcUCUccCCGCggcgGCCGACAu -3'
miRNA:   3'- -GCU--CCGCCGGcAGAa-GGUG----UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 118904 0.67 0.857029
Target:  5'- -cGGGCGGCC-UCggUC-CACCGGCGg -3'
miRNA:   3'- gcUCCGCCGGcAGaaGGuGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 119031 0.66 0.89768
Target:  5'- aCGGGcCGGCCGUCgugggCCuguuCGCCGcGCAc -3'
miRNA:   3'- -GCUCcGCCGGCAGaa---GGu---GUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 120779 0.67 0.871366
Target:  5'- --cGGCGGCCGUCggCgGgGgCGGCGg -3'
miRNA:   3'- gcuCCGCCGGCAGaaGgUgUgGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 122050 0.7 0.710811
Target:  5'- cCGGGGCGG-CGUCggCgGCugUGACGa -3'
miRNA:   3'- -GCUCCGCCgGCAGaaGgUGugGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 122103 0.7 0.72027
Target:  5'- gCGAGGuCGGCgcugaCGUCggCCGCGCUgGACAg -3'
miRNA:   3'- -GCUCC-GCCG-----GCAGaaGGUGUGG-CUGU- -5'
8985 3' -58.5 NC_002512.2 + 123414 0.68 0.825391
Target:  5'- gCGAGGCGGUCGaggUCC-CGCCGcccgugcGCAg -3'
miRNA:   3'- -GCUCCGCCGGCagaAGGuGUGGC-------UGU- -5'
8985 3' -58.5 NC_002512.2 + 124081 0.69 0.742677
Target:  5'- gGGGGCuucuccGCCGUCUUcgcccucgccgucgaCCAUGCCGACGc -3'
miRNA:   3'- gCUCCGc-----CGGCAGAA---------------GGUGUGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.