miRNA display CGI


Results 81 - 100 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 124928 0.69 0.748205
Target:  5'- aCGAGaGacacgaGGCCGgcg-CCGCGCCGACGc -3'
miRNA:   3'- -GCUC-Cg-----CCGGCagaaGGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 126245 0.66 0.909599
Target:  5'- cCGAGGagGGCCGggugUCCgaaGCCGACc -3'
miRNA:   3'- -GCUCCg-CCGGCaga-AGGug-UGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 126453 0.66 0.903745
Target:  5'- aCGGcGGCGGCCGcCUUgUuCGCCGuCGu -3'
miRNA:   3'- -GCU-CCGCCGGCaGAAgGuGUGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 126973 0.75 0.446546
Target:  5'- uGGGGCccguGGCCGUCgaCCGCGCCaGGCGc -3'
miRNA:   3'- gCUCCG----CCGGCAGaaGGUGUGG-CUGU- -5'
8985 3' -58.5 NC_002512.2 + 129872 0.67 0.857029
Target:  5'- aCGGcGGCGggggauucGCCGUCgcCCuCGCCGACGa -3'
miRNA:   3'- -GCU-CCGC--------CGGCAGaaGGuGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 129926 0.66 0.891407
Target:  5'- gCGGGGCcaGGCCGa--UCagGCACCGGCGg -3'
miRNA:   3'- -GCUCCG--CCGGCagaAGg-UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 133655 0.69 0.756433
Target:  5'- cCGGGGCGGUCGcCgccgCCGCcgcggccgccgugGCCGACc -3'
miRNA:   3'- -GCUCCGCCGGCaGaa--GGUG-------------UGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 134133 0.73 0.546771
Target:  5'- -cAGGCGGCCGUCgcggcgcgcgUCCcgGCCGGCGg -3'
miRNA:   3'- gcUCCGCCGGCAGa---------AGGugUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 134170 0.69 0.784125
Target:  5'- aCGGGGa-GCCGUCUUCCcCucCCGGCc -3'
miRNA:   3'- -GCUCCgcCGGCAGAAGGuGu-GGCUGu -5'
8985 3' -58.5 NC_002512.2 + 135247 0.72 0.585082
Target:  5'- uCGAGGCcGUCGUCcgcgCCGCGCuCGACGa -3'
miRNA:   3'- -GCUCCGcCGGCAGaa--GGUGUG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 135325 0.7 0.69172
Target:  5'- cCGAGGuCGG-CGUCagCCGCGCCGGg- -3'
miRNA:   3'- -GCUCC-GCCgGCAGaaGGUGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 135680 0.68 0.809797
Target:  5'- gGAGGCGGCgCucagCgaCCGCAUCGACu -3'
miRNA:   3'- gCUCCGCCG-Gca--GaaGGUGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 136187 0.68 0.834159
Target:  5'- gCGGGGUcGCCGggaUCgcgUCgACGCCGGCGg -3'
miRNA:   3'- -GCUCCGcCGGC---AGa--AGgUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 137229 0.75 0.430263
Target:  5'- -cGGGCGGCCGUCccggauccgcgcgggUCCcgGCGCCGGCGg -3'
miRNA:   3'- gcUCCGCCGGCAGa--------------AGG--UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 138952 0.66 0.884927
Target:  5'- aCGAcGGCGG-CGg---CCGCGCCGGCc -3'
miRNA:   3'- -GCU-CCGCCgGCagaaGGUGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 142006 0.79 0.263149
Target:  5'- gCGAuccGGCGGCCGUCUcuUCCGCggccggggGCCGGCGa -3'
miRNA:   3'- -GCU---CCGCCGGCAGA--AGGUG--------UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 143741 0.7 0.701292
Target:  5'- gGAGGCGGCCGcggcgucggCUUCCAgGuCCG-CGa -3'
miRNA:   3'- gCUCCGCCGGCa--------GAAGGUgU-GGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 143898 0.71 0.633611
Target:  5'- uCGAGGCuGUCGUCgUCCGagagggcgaacuCGCCGACGa -3'
miRNA:   3'- -GCUCCGcCGGCAGaAGGU------------GUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 146115 0.71 0.64334
Target:  5'- gCGGcGGCGgcGCCGUCUUCUGCACCuGCc -3'
miRNA:   3'- -GCU-CCGC--CGGCAGAAGGUGUGGcUGu -5'
8985 3' -58.5 NC_002512.2 + 146723 0.68 0.801376
Target:  5'- gCGGGGCGGCgGcCgcggCCGCcgggcCCGACGa -3'
miRNA:   3'- -GCUCCGCCGgCaGaa--GGUGu----GGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.