miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 215217 0.66 0.903745
Target:  5'- gCGGGGCGgacaacGCCGUCUaCCugcuCGCCcACAg -3'
miRNA:   3'- -GCUCCGC------CGGCAGAaGGu---GUGGcUGU- -5'
8985 3' -58.5 NC_002512.2 + 215068 0.66 0.89768
Target:  5'- --cGGCGG-CGUCUaCCGCGUCGGCGg -3'
miRNA:   3'- gcuCCGCCgGCAGAaGGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 214457 0.71 0.633611
Target:  5'- gCGAGGacgaGGCCGUCUacugcuUCCAC-CgCGGCGu -3'
miRNA:   3'- -GCUCCg---CCGGCAGA------AGGUGuG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 212362 0.69 0.784125
Target:  5'- gCGAGcUGGCCGcCUacgCCgACGCCGACGu -3'
miRNA:   3'- -GCUCcGCCGGCaGAa--GG-UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 211250 0.76 0.396351
Target:  5'- uCGAGGCGGCCGUCgacgCCAuguUCGACc -3'
miRNA:   3'- -GCUCCGCCGGCAGaa--GGUgu-GGCUGu -5'
8985 3' -58.5 NC_002512.2 + 209032 0.7 0.682104
Target:  5'- gCGGGGCGGCCG-CgUCCcggaGCGauuCCGACGg -3'
miRNA:   3'- -GCUCCGCCGGCaGaAGG----UGU---GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 207656 0.66 0.907865
Target:  5'- --cGGCGGCCGUgguggcgucccgggCUcUCC-CGCCGGCc -3'
miRNA:   3'- gcuCCGCCGGCA--------------GA-AGGuGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 207523 0.67 0.864292
Target:  5'- aCGAGGacggGGCCGcgucCUcCCGCugCGACu -3'
miRNA:   3'- -GCUCCg---CCGGCa---GAaGGUGugGCUGu -5'
8985 3' -58.5 NC_002512.2 + 207493 0.7 0.72027
Target:  5'- --cGGCGcCCGUCUccggaUCCGCgACCGACGa -3'
miRNA:   3'- gcuCCGCcGGCAGA-----AGGUG-UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 204848 0.7 0.710811
Target:  5'- aCGAcGGCGGUCGgucCUcguggaggUCCGCgACCGACGg -3'
miRNA:   3'- -GCU-CCGCCGGCa--GA--------AGGUG-UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 201883 0.69 0.784125
Target:  5'- aCGGcGGCGGCuucucCGUCUccCCGCGCCGGa- -3'
miRNA:   3'- -GCU-CCGCCG-----GCAGAa-GGUGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 201797 0.69 0.775311
Target:  5'- aCGGGGCGgcgaccucuccGCCGUCUccgCCGCGCCcgggGGCu -3'
miRNA:   3'- -GCUCCGC-----------CGGCAGAa--GGUGUGG----CUGu -5'
8985 3' -58.5 NC_002512.2 + 199090 0.67 0.878246
Target:  5'- cCGAGGUGGCCGcCaggUCCACguucACCcucuGCAg -3'
miRNA:   3'- -GCUCCGCCGGCaGa--AGGUG----UGGc---UGU- -5'
8985 3' -58.5 NC_002512.2 + 197846 0.66 0.884268
Target:  5'- aGGGGCGGCgGgaggcccUCUUCa--ACCGACu -3'
miRNA:   3'- gCUCCGCCGgC-------AGAAGgugUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 197153 0.69 0.766381
Target:  5'- -aAGGUcgccacGGCCGUCUUCCAC-CCG-CGc -3'
miRNA:   3'- gcUCCG------CCGGCAGAAGGUGuGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 195137 0.71 0.67245
Target:  5'- aGAGGCGG-UGUCgcgacaGCACCGACAc -3'
miRNA:   3'- gCUCCGCCgGCAGaagg--UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 193138 0.66 0.891407
Target:  5'- aCGucaCGGUCGUCcucgUCCugGCCGGCGu -3'
miRNA:   3'- -GCuccGCCGGCAGa---AGGugUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 192686 0.69 0.76097
Target:  5'- gGAGGUguggcggcgcgccgaGGCCGUCUUCUACuucuCCGcCGc -3'
miRNA:   3'- gCUCCG---------------CCGGCAGAAGGUGu---GGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 190564 1.09 0.003139
Target:  5'- cCGAGGCGGCCGUCUUCCACACCGACAa -3'
miRNA:   3'- -GCUCCGCCGGCAGAAGGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 189760 0.7 0.682104
Target:  5'- uCGAGGCGGgggacaaaauCCGUCcUCC-CGCCGuACGa -3'
miRNA:   3'- -GCUCCGCC----------GGCAGaAGGuGUGGC-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.