miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 189634 0.68 0.808962
Target:  5'- uCGucGCGGUCGgCUUCgucgggaCGCGCCGACAc -3'
miRNA:   3'- -GCucCGCCGGCaGAAG-------GUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 185433 0.67 0.863574
Target:  5'- gGAGGUcuucgaGGCCGUCcugUCCGCccucugcuccuucGCCGugGu -3'
miRNA:   3'- gCUCCG------CCGGCAGa--AGGUG-------------UGGCugU- -5'
8985 3' -58.5 NC_002512.2 + 185387 0.7 0.729661
Target:  5'- gCGGcGGCugcgaGGCCGUCUucUCCGC-CCGGCc -3'
miRNA:   3'- -GCU-CCG-----CCGGCAGA--AGGUGuGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 185198 0.67 0.864292
Target:  5'- aCGcGGCGGCgGUCgacgCCGCGgUGGCc -3'
miRNA:   3'- -GCuCCGCCGgCAGaa--GGUGUgGCUGu -5'
8985 3' -58.5 NC_002512.2 + 184681 0.7 0.710811
Target:  5'- --cGGCGGCCG---UCCGCGCCGcCGg -3'
miRNA:   3'- gcuCCGCCGGCagaAGGUGUGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 179432 0.66 0.909599
Target:  5'- uGGGuuucGCGGCCGgcgUCUUCUggacauccgGCGCCGGCc -3'
miRNA:   3'- gCUC----CGCCGGC---AGAAGG---------UGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 175775 0.69 0.784125
Target:  5'- gCGGGGUGGUcaCGUCg--CAgGCCGACAg -3'
miRNA:   3'- -GCUCCGCCG--GCAGaagGUgUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 173790 0.68 0.834159
Target:  5'- aCGAGGacaaGGCCGcCUUCCAgcUCGAUc -3'
miRNA:   3'- -GCUCCg---CCGGCaGAAGGUguGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 169025 0.7 0.729661
Target:  5'- -cGGGCGGgCGUCcgcgagCgGCGCCGGCAu -3'
miRNA:   3'- gcUCCGCCgGCAGaa----GgUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 166299 0.68 0.792816
Target:  5'- aCGAGGCGGCCGcgUCgcccaaCCugGCCa--- -3'
miRNA:   3'- -GCUCCGCCGGC--AGaa----GGugUGGcugu -5'
8985 3' -58.5 NC_002512.2 + 165982 0.7 0.701292
Target:  5'- gCGGGGCGGUCGguUCUUCguCAacucucCCGACGg -3'
miRNA:   3'- -GCUCCGCCGGC--AGAAGguGU------GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 160903 0.68 0.791088
Target:  5'- gCGGGGCGGCCGgggcaagggacgCggacagUCGCugCGGCGg -3'
miRNA:   3'- -GCUCCGCCGGCa-----------Gaa----GGUGugGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 158999 0.72 0.585082
Target:  5'- gGAGGCGGCgGcCccggcgUCCGCGCCGGg- -3'
miRNA:   3'- gCUCCGCCGgCaGa-----AGGUGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 157822 0.69 0.775311
Target:  5'- gGGGGcCGGCCGcgacCUUCUACAagCGGCAc -3'
miRNA:   3'- gCUCC-GCCGGCa---GAAGGUGUg-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 157060 0.67 0.871366
Target:  5'- -aAGGCGGgCGUCccggggUCCGggguCGCCGGCGc -3'
miRNA:   3'- gcUCCGCCgGCAGa-----AGGU----GUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 156836 0.68 0.825391
Target:  5'- gCGAGGCcugcgggGGCCG-CUgcugCCACACCuGCu -3'
miRNA:   3'- -GCUCCG-------CCGGCaGAa---GGUGUGGcUGu -5'
8985 3' -58.5 NC_002512.2 + 153276 0.67 0.852582
Target:  5'- gCGAuGGCGGCCccggacagacgUCCgACGCCGGCGu -3'
miRNA:   3'- -GCU-CCGCCGGcaga-------AGG-UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 152740 0.68 0.826196
Target:  5'- gGGGGCGGUCGgaaggUCC-C-CCGACGg -3'
miRNA:   3'- gCUCCGCCGGCaga--AGGuGuGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 151073 0.69 0.775311
Target:  5'- gGGGGauGCgGUCUcggUCCGCGCCGGa- -3'
miRNA:   3'- gCUCCgcCGgCAGA---AGGUGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 149007 0.67 0.857029
Target:  5'- cCGGGG-GGCCGcCgcggaCCGC-CCGACAc -3'
miRNA:   3'- -GCUCCgCCGGCaGaa---GGUGuGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.