Results 41 - 60 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 147451 | 0.74 | 0.463166 |
Target: 5'- aGAcGGCGGCCGUCUgucgcugcuggucUUCGCGCgGGCGc -3' miRNA: 3'- gCU-CCGCCGGCAGA-------------AGGUGUGgCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 126973 | 0.75 | 0.446546 |
Target: 5'- uGGGGCccguGGCCGUCgaCCGCGCCaGGCGc -3' miRNA: 3'- gCUCCG----CCGGCAGaaGGUGUGG-CUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 137229 | 0.75 | 0.430263 |
Target: 5'- -cGGGCGGCCGUCccggauccgcgcgggUCCcgGCGCCGGCGg -3' miRNA: 3'- gcUCCGCCGGCAGa--------------AGG--UGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 101607 | 0.75 | 0.412679 |
Target: 5'- -cGGGCGGCCGUCggCCcgGCGCCGGg- -3' miRNA: 3'- gcUCCGCCGGCAGaaGG--UGUGGCUgu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 89360 | 0.77 | 0.342588 |
Target: 5'- uCGAGGCGGCCGUCc-UgGCGCCGuACGu -3' miRNA: 3'- -GCUCCGCCGGCAGaaGgUGUGGC-UGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 79940 | 0.7 | 0.69172 |
Target: 5'- cCGAGGCGGCgCGggggUCCGCcuGCCGuCGg -3' miRNA: 3'- -GCUCCGCCG-GCaga-AGGUG--UGGCuGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 69081 | 0.7 | 0.69268 |
Target: 5'- cCGGGGCGGCUGguacugcugccguggCUgcugCUGCGCCGGCc -3' miRNA: 3'- -GCUCCGCCGGCa--------------GAa---GGUGUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 37273 | 0.68 | 0.818073 |
Target: 5'- uGAGGCcGCCGUCgcCCGC-CgCGGCGc -3' miRNA: 3'- gCUCCGcCGGCAGaaGGUGuG-GCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 135680 | 0.68 | 0.809797 |
Target: 5'- gGAGGCGGCgCucagCgaCCGCAUCGACu -3' miRNA: 3'- gCUCCGCCG-Gca--GaaGGUGUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 81610 | 0.68 | 0.808962 |
Target: 5'- uGAGGUgcucgucggccagGGCCGUCgccacgUCCAgGCuCGGCGc -3' miRNA: 3'- gCUCCG-------------CCGGCAGa-----AGGUgUG-GCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 53864 | 0.68 | 0.792816 |
Target: 5'- aGAGGgGGaCCGUCcgUUCCccagGgACCGACGg -3' miRNA: 3'- gCUCCgCC-GGCAG--AAGG----UgUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 134170 | 0.69 | 0.784125 |
Target: 5'- aCGGGGa-GCCGUCUUCCcCucCCGGCc -3' miRNA: 3'- -GCUCCgcCGGCAGAAGGuGu-GGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 1976 | 0.69 | 0.775311 |
Target: 5'- gGAGGCGGCgCGUCcgucUCCGCcuCgGACu -3' miRNA: 3'- gCUCCGCCG-GCAGa---AGGUGu-GgCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 225439 | 0.69 | 0.766381 |
Target: 5'- uGAGGCGGaCGauggCUUCCGUACCGaACAc -3' miRNA: 3'- gCUCCGCCgGCa---GAAGGUGUGGC-UGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 133655 | 0.69 | 0.756433 |
Target: 5'- cCGGGGCGGUCGcCgccgCCGCcgcggccgccgugGCCGACc -3' miRNA: 3'- -GCUCCGCCGGCaGaa--GGUG-------------UGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 108460 | 0.69 | 0.748205 |
Target: 5'- cCGGGGCcgacuccgcGGgCGUCUcccUCCACGCCaGGCGc -3' miRNA: 3'- -GCUCCG---------CCgGCAGA---AGGUGUGG-CUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 124081 | 0.69 | 0.742677 |
Target: 5'- gGGGGCuucuccGCCGUCUUcgcccucgccgucgaCCAUGCCGACGc -3' miRNA: 3'- gCUCCGc-----CGGCAGAA---------------GGUGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 82012 | 0.7 | 0.714603 |
Target: 5'- uCGcGGCGaGCCGUCgcccgggucggggUCGCGCCGGCGg -3' miRNA: 3'- -GCuCCGC-CGGCAGaa-----------GGUGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 122050 | 0.7 | 0.710811 |
Target: 5'- cCGGGGCGG-CGUCggCgGCugUGACGa -3' miRNA: 3'- -GCUCCGCCgGCAGaaGgUGugGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 103441 | 0.7 | 0.710811 |
Target: 5'- -aAGGCGGCCG-CcgCCGuCGCCGGCc -3' miRNA: 3'- gcUCCGCCGGCaGaaGGU-GUGGCUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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