Results 61 - 80 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 152740 | 0.68 | 0.826196 |
Target: 5'- gGGGGCGGUCGgaaggUCC-C-CCGACGg -3' miRNA: 3'- gCUCCGCCGGCaga--AGGuGuGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 118077 | 0.68 | 0.826196 |
Target: 5'- gGAGGgGGCgG-CUcCgGCGCCGGCGg -3' miRNA: 3'- gCUCCgCCGgCaGAaGgUGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 123414 | 0.68 | 0.825391 |
Target: 5'- gCGAGGCGGUCGaggUCC-CGCCGcccgugcGCAg -3' miRNA: 3'- -GCUCCGCCGGCagaAGGuGUGGC-------UGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 103219 | 0.68 | 0.818073 |
Target: 5'- cCGAGGCGGCucgCGUCg-CCGCccgUCGACGg -3' miRNA: 3'- -GCUCCGCCG---GCAGaaGGUGu--GGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 47457 | 0.68 | 0.818073 |
Target: 5'- gGAGGCcgaGGCCGagUUCCGCAa-GGCGg -3' miRNA: 3'- gCUCCG---CCGGCagAAGGUGUggCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 37273 | 0.68 | 0.818073 |
Target: 5'- uGAGGCcGCCGUCgcCCGC-CgCGGCGc -3' miRNA: 3'- gCUCCGcCGGCAGaaGGUGuG-GCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 135680 | 0.68 | 0.809797 |
Target: 5'- gGAGGCGGCgCucagCgaCCGCAUCGACu -3' miRNA: 3'- gCUCCGCCG-Gca--GaaGGUGUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 108460 | 0.69 | 0.748205 |
Target: 5'- cCGGGGCcgacuccgcGGgCGUCUcccUCCACGCCaGGCGc -3' miRNA: 3'- -GCUCCG---------CCgGCAGA---AGGUGUGG-CUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 133655 | 0.69 | 0.756433 |
Target: 5'- cCGGGGCGGUCGcCgccgCCGCcgcggccgccgugGCCGACc -3' miRNA: 3'- -GCUCCGCCGGCaGaa--GGUG-------------UGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 225439 | 0.69 | 0.766381 |
Target: 5'- uGAGGCGGaCGauggCUUCCGUACCGaACAc -3' miRNA: 3'- gCUCCGCCgGCa---GAAGGUGUGGC-UGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 1976 | 0.69 | 0.775311 |
Target: 5'- gGAGGCGGCgCGUCcgucUCCGCcuCgGACu -3' miRNA: 3'- gCUCCGCCG-GCAGa---AGGUGu-GgCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 134170 | 0.69 | 0.784125 |
Target: 5'- aCGGGGa-GCCGUCUUCCcCucCCGGCc -3' miRNA: 3'- -GCUCCgcCGGCAGAAGGuGu-GGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 53864 | 0.68 | 0.792816 |
Target: 5'- aGAGGgGGaCCGUCcgUUCCccagGgACCGACGg -3' miRNA: 3'- gCUCCgCC-GGCAG--AAGG----UgUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 81610 | 0.68 | 0.808962 |
Target: 5'- uGAGGUgcucgucggccagGGCCGUCgccacgUCCAgGCuCGGCGc -3' miRNA: 3'- gCUCCG-------------CCGGCAGa-----AGGUgUG-GCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 95950 | 0.66 | 0.903745 |
Target: 5'- gGAcGCgGGCCGUCgggCCGcCGCCGuACAg -3' miRNA: 3'- gCUcCG-CCGGCAGaa-GGU-GUGGC-UGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 126453 | 0.66 | 0.903745 |
Target: 5'- aCGGcGGCGGCCGcCUUgUuCGCCGuCGu -3' miRNA: 3'- -GCU-CCGCCGGCaGAAgGuGUGGCuGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 215217 | 0.66 | 0.903745 |
Target: 5'- gCGGGGCGgacaacGCCGUCUaCCugcuCGCCcACAg -3' miRNA: 3'- -GCUCCGC------CGGCAGAaGGu---GUGGcUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 207656 | 0.66 | 0.907865 |
Target: 5'- --cGGCGGCCGUgguggcgucccgggCUcUCC-CGCCGGCc -3' miRNA: 3'- gcuCCGCCGGCA--------------GA-AGGuGUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 179432 | 0.66 | 0.909599 |
Target: 5'- uGGGuuucGCGGCCGgcgUCUUCUggacauccgGCGCCGGCc -3' miRNA: 3'- gCUC----CGCCGGC---AGAAGG---------UGUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 190564 | 1.09 | 0.003139 |
Target: 5'- cCGAGGCGGCCGUCUUCCACACCGACAa -3' miRNA: 3'- -GCUCCGCCGGCAGAAGGUGUGGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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