miRNA display CGI


Results 81 - 100 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 185198 0.67 0.864292
Target:  5'- aCGcGGCGGCgGUCgacgCCGCGgUGGCc -3'
miRNA:   3'- -GCuCCGCCGgCAGaa--GGUGUgGCUGu -5'
8985 3' -58.5 NC_002512.2 + 105617 0.67 0.864292
Target:  5'- cCGAGGCaccGGCCGUCgucggucUCCGagacCCGGCc -3'
miRNA:   3'- -GCUCCG---CCGGCAGa------AGGUgu--GGCUGu -5'
8985 3' -58.5 NC_002512.2 + 92733 0.67 0.864292
Target:  5'- gGGGGCGcGCuCGg--UCCgaugGCGCCGACGa -3'
miRNA:   3'- gCUCCGC-CG-GCagaAGG----UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 220214 0.67 0.864292
Target:  5'- cCGAcGGCGGCCcgggggacgaGUgCgcccgCCugGCCGACAu -3'
miRNA:   3'- -GCU-CCGCCGG----------CA-Gaa---GGugUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 207523 0.67 0.864292
Target:  5'- aCGAGGacggGGCCGcgucCUcCCGCugCGACu -3'
miRNA:   3'- -GCUCCg---CCGGCa---GAaGGUGugGCUGu -5'
8985 3' -58.5 NC_002512.2 + 185433 0.67 0.863574
Target:  5'- gGAGGUcuucgaGGCCGUCcugUCCGCccucugcuccuucGCCGugGu -3'
miRNA:   3'- gCUCCG------CCGGCAGa--AGGUG-------------UGGCugU- -5'
8985 3' -58.5 NC_002512.2 + 138952 0.66 0.884927
Target:  5'- aCGAcGGCGG-CGg---CCGCGCCGGCc -3'
miRNA:   3'- -GCU-CCGCCgGCagaaGGUGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 221410 0.66 0.884927
Target:  5'- gGAGGCGGCgGgUCUgUCCGacgGCCGcCAu -3'
miRNA:   3'- gCUCCGCCGgC-AGA-AGGUg--UGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 108195 0.66 0.884927
Target:  5'- -aGGGCGGCCacGUC-UCCuauGCACuCGGCGg -3'
miRNA:   3'- gcUCCGCCGG--CAGaAGG---UGUG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 179432 0.66 0.909599
Target:  5'- uGGGuuucGCGGCCGgcgUCUUCUggacauccgGCGCCGGCc -3'
miRNA:   3'- gCUC----CGCCGGC---AGAAGG---------UGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 207656 0.66 0.907865
Target:  5'- --cGGCGGCCGUgguggcgucccgggCUcUCC-CGCCGGCc -3'
miRNA:   3'- gcuCCGCCGGCA--------------GA-AGGuGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 215217 0.66 0.903745
Target:  5'- gCGGGGCGgacaacGCCGUCUaCCugcuCGCCcACAg -3'
miRNA:   3'- -GCUCCGC------CGGCAGAaGGu---GUGGcUGU- -5'
8985 3' -58.5 NC_002512.2 + 126453 0.66 0.903745
Target:  5'- aCGGcGGCGGCCGcCUUgUuCGCCGuCGu -3'
miRNA:   3'- -GCU-CCGCCGGCaGAAgGuGUGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 95950 0.66 0.903745
Target:  5'- gGAcGCgGGCCGUCgggCCGcCGCCGuACAg -3'
miRNA:   3'- gCUcCG-CCGGCAGaa-GGU-GUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 4017 0.66 0.903148
Target:  5'- cCGAGGCGgaGCCGUgUucauguacuacggUCCAC-CCGAgAa -3'
miRNA:   3'- -GCUCCGC--CGGCAgA-------------AGGUGuGGCUgU- -5'
8985 3' -58.5 NC_002512.2 + 215068 0.66 0.89768
Target:  5'- --cGGCGG-CGUCUaCCGCGUCGGCGg -3'
miRNA:   3'- gcuCCGCCgGCAGAaGGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 112149 0.66 0.89768
Target:  5'- aCGAGGCGGUCGaCggCga-GCCGGCGc -3'
miRNA:   3'- -GCUCCGCCGGCaGaaGgugUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 39112 0.66 0.897062
Target:  5'- gGAGaacgaacaccuGUGGCUGUgucgagacgaucgCUUCUGCGCCGACAu -3'
miRNA:   3'- gCUC-----------CGCCGGCA-------------GAAGGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 193138 0.66 0.891407
Target:  5'- aCGucaCGGUCGUCcucgUCCugGCCGGCGu -3'
miRNA:   3'- -GCuccGCCGGCAGa---AGGugUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 129926 0.66 0.891407
Target:  5'- gCGGGGCcaGGCCGa--UCagGCACCGGCGg -3'
miRNA:   3'- -GCUCCG--CCGGCagaAGg-UGUGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.