miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 105617 0.67 0.864292
Target:  5'- cCGAGGCaccGGCCGUCgucggucUCCGagacCCGGCc -3'
miRNA:   3'- -GCUCCG---CCGGCAGa------AGGUgu--GGCUGu -5'
8985 3' -58.5 NC_002512.2 + 92594 0.67 0.878246
Target:  5'- aGGGGCGGCgGUCccgaggCCGguCgCGACGa -3'
miRNA:   3'- gCUCCGCCGgCAGaa----GGUguG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 193138 0.66 0.891407
Target:  5'- aCGucaCGGUCGUCcucgUCCugGCCGGCGu -3'
miRNA:   3'- -GCuccGCCGGCAGa---AGGugUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 215217 0.66 0.903745
Target:  5'- gCGGGGCGgacaacGCCGUCUaCCugcuCGCCcACAg -3'
miRNA:   3'- -GCUCCGC------CGGCAGAaGGu---GUGGcUGU- -5'
8985 3' -58.5 NC_002512.2 + 116672 0.67 0.841957
Target:  5'- uCGuGGCGGaCCG-CgagCCGCugGCCGACGc -3'
miRNA:   3'- -GCuCCGCC-GGCaGaa-GGUG--UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 227787 0.67 0.857029
Target:  5'- cCGAGccGCGGCCGUaccgcccgCUcCCGC-CCGGCGu -3'
miRNA:   3'- -GCUC--CGCCGGCA--------GAaGGUGuGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 199090 0.67 0.878246
Target:  5'- cCGAGGUGGCCGcCaggUCCACguucACCcucuGCAg -3'
miRNA:   3'- -GCUCCGCCGGCaGa--AGGUG----UGGc---UGU- -5'
8985 3' -58.5 NC_002512.2 + 207656 0.66 0.907865
Target:  5'- --cGGCGGCCGUgguggcgucccgggCUcUCC-CGCCGGCc -3'
miRNA:   3'- gcuCCGCCGGCA--------------GA-AGGuGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 185433 0.67 0.863574
Target:  5'- gGAGGUcuucgaGGCCGUCcugUCCGCccucugcuccuucGCCGugGu -3'
miRNA:   3'- gCUCCG------CCGGCAGa--AGGUG-------------UGGCugU- -5'
8985 3' -58.5 NC_002512.2 + 179432 0.66 0.909599
Target:  5'- uGGGuuucGCGGCCGgcgUCUUCUggacauccgGCGCCGGCc -3'
miRNA:   3'- gCUC----CGCCGGC---AGAAGG---------UGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 96508 0.67 0.878246
Target:  5'- -cGGGCGaccGCCGgagggagCCGCGCCGGCGg -3'
miRNA:   3'- gcUCCGC---CGGCagaa---GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 92733 0.67 0.864292
Target:  5'- gGGGGCGcGCuCGg--UCCgaugGCGCCGACGa -3'
miRNA:   3'- gCUCCGC-CG-GCagaAGG----UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 138952 0.66 0.884927
Target:  5'- aCGAcGGCGG-CGg---CCGCGCCGGCc -3'
miRNA:   3'- -GCU-CCGCCgGCagaaGGUGUGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 129926 0.66 0.891407
Target:  5'- gCGGGGCcaGGCCGa--UCagGCACCGGCGg -3'
miRNA:   3'- -GCUCCG--CCGGCagaAGg-UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 215068 0.66 0.89768
Target:  5'- --cGGCGG-CGUCUaCCGCGUCGGCGg -3'
miRNA:   3'- gcuCCGCCgGCAGAaGGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 126453 0.66 0.903745
Target:  5'- aCGGcGGCGGCCGcCUUgUuCGCCGuCGu -3'
miRNA:   3'- -GCU-CCGCCGGCaGAAgGuGUGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 95642 0.68 0.834159
Target:  5'- gGGGGCGGCuCGg---CCGCccCCGGCAc -3'
miRNA:   3'- gCUCCGCCG-GCagaaGGUGu-GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 173790 0.68 0.834159
Target:  5'- aCGAGGacaaGGCCGcCUUCCAgcUCGAUc -3'
miRNA:   3'- -GCUCCg---CCGGCaGAAGGUguGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 98128 0.67 0.849582
Target:  5'- cCGGGGCgcuGGUCGUCgcggCCGCccgccCCGGCGg -3'
miRNA:   3'- -GCUCCG---CCGGCAGaa--GGUGu----GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 149007 0.67 0.857029
Target:  5'- cCGGGG-GGCCGcCgcggaCCGC-CCGACAc -3'
miRNA:   3'- -GCUCCgCCGGCaGaa---GGUGuGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.