miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 95855 0.68 0.834159
Target:  5'- gGGGGCGG-CGUCcUCCcagggccgcGCGCCGAgGa -3'
miRNA:   3'- gCUCCGCCgGCAGaAGG---------UGUGGCUgU- -5'
8985 3' -58.5 NC_002512.2 + 219433 0.68 0.826196
Target:  5'- gCGGcGGCGGCC-UCcUCCGCGCCcccgugcccGACGg -3'
miRNA:   3'- -GCU-CCGCCGGcAGaAGGUGUGG---------CUGU- -5'
8985 3' -58.5 NC_002512.2 + 108195 0.66 0.884927
Target:  5'- -aGGGCGGCCacGUC-UCCuauGCACuCGGCGg -3'
miRNA:   3'- gcUCCGCCGG--CAGaAGG---UGUG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 217848 0.66 0.884927
Target:  5'- aGAGGCGGCagcggUCUGC-CCGGCGu -3'
miRNA:   3'- gCUCCGCCGgcagaAGGUGuGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 92594 0.67 0.878246
Target:  5'- aGGGGCGGCgGUCccgaggCCGguCgCGACGa -3'
miRNA:   3'- gCUCCGCCGgCAGaa----GGUguG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 105617 0.67 0.864292
Target:  5'- cCGAGGCaccGGCCGUCgucggucUCCGagacCCGGCc -3'
miRNA:   3'- -GCUCCG---CCGGCAGa------AGGUgu--GGCUGu -5'
8985 3' -58.5 NC_002512.2 + 227787 0.67 0.857029
Target:  5'- cCGAGccGCGGCCGUaccgcccgCUcCCGC-CCGGCGu -3'
miRNA:   3'- -GCUC--CGCCGGCA--------GAaGGUGuGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 228105 0.67 0.852582
Target:  5'- gCGAGGaGGgCGUCggCCGCaacgucgugcugggcGCCGACGg -3'
miRNA:   3'- -GCUCCgCCgGCAGaaGGUG---------------UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 217681 0.67 0.841957
Target:  5'- cCGGGcGCuugGGCUGgcUCUUCCcCGCCGGCGu -3'
miRNA:   3'- -GCUC-CG---CCGGC--AGAAGGuGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 116672 0.67 0.841957
Target:  5'- uCGuGGCGGaCCG-CgagCCGCugGCCGACGc -3'
miRNA:   3'- -GCuCCGCC-GGCaGaa-GGUG--UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 143898 0.71 0.633611
Target:  5'- uCGAGGCuGUCGUCgUCCGagagggcgaacuCGCCGACGa -3'
miRNA:   3'- -GCUCCGcCGGCAGaAGGU------------GUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 222495 0.71 0.65306
Target:  5'- uGGcGGUGGCCGcCUUCUGCGCCuGGCc -3'
miRNA:   3'- gCU-CCGCCGGCaGAAGGUGUGG-CUGu -5'
8985 3' -58.5 NC_002512.2 + 220547 0.68 0.801376
Target:  5'- gCGAgGGCGucacGCCGUCUaCCugGCCGuGCGc -3'
miRNA:   3'- -GCU-CCGC----CGGCAGAaGGugUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 166299 0.68 0.792816
Target:  5'- aCGAGGCGGCCGcgUCgcccaaCCugGCCa--- -3'
miRNA:   3'- -GCUCCGCCGGC--AGaa----GGugUGGcugu -5'
8985 3' -58.5 NC_002512.2 + 201797 0.69 0.775311
Target:  5'- aCGGGGCGgcgaccucuccGCCGUCUccgCCGCGCCcgggGGCu -3'
miRNA:   3'- -GCUCCGC-----------CGGCAGAa--GGUGUGG----CUGu -5'
8985 3' -58.5 NC_002512.2 + 197153 0.69 0.766381
Target:  5'- -aAGGUcgccacGGCCGUCUUCCAC-CCG-CGc -3'
miRNA:   3'- gcUCCG------CCGGCAGAAGGUGuGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 124928 0.69 0.748205
Target:  5'- aCGAGaGacacgaGGCCGgcg-CCGCGCCGACGc -3'
miRNA:   3'- -GCUC-Cg-----CCGGCagaaGGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 207493 0.7 0.72027
Target:  5'- --cGGCGcCCGUCUccggaUCCGCgACCGACGa -3'
miRNA:   3'- gcuCCGCcGGCAGA-----AGGUG-UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 220388 0.7 0.701292
Target:  5'- uGGGGcCGGCCGUCgUCUAC-CCGcCGc -3'
miRNA:   3'- gCUCC-GCCGGCAGaAGGUGuGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 143741 0.7 0.701292
Target:  5'- gGAGGCGGCCGcggcgucggCUUCCAgGuCCG-CGa -3'
miRNA:   3'- gCUCCGCCGGCa--------GAAGGUgU-GGCuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.