miRNA display CGI


Results 81 - 100 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 122103 0.7 0.72027
Target:  5'- gCGAGGuCGGCgcugaCGUCggCCGCGCUgGACAg -3'
miRNA:   3'- -GCUCC-GCCG-----GCAGaaGGUGUGG-CUGU- -5'
8985 3' -58.5 NC_002512.2 + 204848 0.7 0.710811
Target:  5'- aCGAcGGCGGUCGgucCUcguggaggUCCGCgACCGACGg -3'
miRNA:   3'- -GCU-CCGCCGGCa--GA--------AGGUG-UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 220388 0.7 0.701292
Target:  5'- uGGGGcCGGCCGUCgUCUAC-CCGcCGc -3'
miRNA:   3'- gCUCC-GCCGGCAGaAGGUGuGGCuGU- -5'
8985 3' -58.5 NC_002512.2 + 165982 0.7 0.701292
Target:  5'- gCGGGGCGGUCGguUCUUCguCAacucucCCGACGg -3'
miRNA:   3'- -GCUCCGCCGGC--AGAAGguGU------GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 201797 0.69 0.775311
Target:  5'- aCGGGGCGgcgaccucuccGCCGUCUccgCCGCGCCcgggGGCu -3'
miRNA:   3'- -GCUCCGC-----------CGGCAGAa--GGUGUGG----CUGu -5'
8985 3' -58.5 NC_002512.2 + 156836 0.68 0.825391
Target:  5'- gCGAGGCcugcgggGGCCG-CUgcugCCACACCuGCu -3'
miRNA:   3'- -GCUCCG-------CCGGCaGAa---GGUGUGGcUGu -5'
8985 3' -58.5 NC_002512.2 + 212362 0.69 0.784125
Target:  5'- gCGAGcUGGCCGcCUacgCCgACGCCGACGu -3'
miRNA:   3'- -GCUCcGCCGGCaGAa--GG-UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 91869 0.67 0.849582
Target:  5'- cCGAGGCcGCCGUC--CgGCGCgGGCGg -3'
miRNA:   3'- -GCUCCGcCGGCAGaaGgUGUGgCUGU- -5'
8985 3' -58.5 NC_002512.2 + 173790 0.68 0.834159
Target:  5'- aCGAGGacaaGGCCGcCUUCCAgcUCGAUc -3'
miRNA:   3'- -GCUCCg---CCGGCaGAAGGUguGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 166299 0.68 0.792816
Target:  5'- aCGAGGCGGCCGcgUCgcccaaCCugGCCa--- -3'
miRNA:   3'- -GCUCCGCCGGC--AGaa----GGugUGGcugu -5'
8985 3' -58.5 NC_002512.2 + 225602 0.68 0.826196
Target:  5'- uCGAccaGCuGGCCGUCgucgUCCGguCCGACGa -3'
miRNA:   3'- -GCUc--CG-CCGGCAGa---AGGUguGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 37273 0.68 0.818073
Target:  5'- uGAGGCcGCCGUCgcCCGC-CgCGGCGc -3'
miRNA:   3'- gCUCCGcCGGCAGaaGGUGuG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 47457 0.68 0.818073
Target:  5'- gGAGGCcgaGGCCGagUUCCGCAa-GGCGg -3'
miRNA:   3'- gCUCCG---CCGGCagAAGGUGUggCUGU- -5'
8985 3' -58.5 NC_002512.2 + 103219 0.68 0.818073
Target:  5'- cCGAGGCGGCucgCGUCg-CCGCccgUCGACGg -3'
miRNA:   3'- -GCUCCGCCG---GCAGaaGGUGu--GGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 119031 0.66 0.89768
Target:  5'- aCGGGcCGGCCGUCgugggCCuguuCGCCGcGCAc -3'
miRNA:   3'- -GCUCcGCCGGCAGaa---GGu---GUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 7398 0.66 0.891407
Target:  5'- aGaAGGCGGCCaccg-CCACGuuGACGa -3'
miRNA:   3'- gC-UCCGCCGGcagaaGGUGUggCUGU- -5'
8985 3' -58.5 NC_002512.2 + 28523 0.66 0.891407
Target:  5'- gGGGGUGaGCUGUCgggUCCGCcgccgcCCGAUg -3'
miRNA:   3'- gCUCCGC-CGGCAGa--AGGUGu-----GGCUGu -5'
8985 3' -58.5 NC_002512.2 + 117407 0.66 0.891407
Target:  5'- uCGAGGaccaGGgCGUCaUCCGCuCCGAg- -3'
miRNA:   3'- -GCUCCg---CCgGCAGaAGGUGuGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 79123 0.66 0.89582
Target:  5'- cCGAGuCGGCCGUCaaucacgggucugggCCGCgcgcggGCCGACGg -3'
miRNA:   3'- -GCUCcGCCGGCAGaa-------------GGUG------UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 79940 0.7 0.69172
Target:  5'- cCGAGGCGGCgCGggggUCCGCcuGCCGuCGg -3'
miRNA:   3'- -GCUCCGCCG-GCaga-AGGUG--UGGCuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.