miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 5' -58.7 NC_002512.2 + 45318 0.66 0.889871
Target:  5'- uGCCggCCcGCGGGUCGgagggccguccGCCGGCcCGc -3'
miRNA:   3'- -UGGaaGGaCGCCUAGU-----------CGGCCGaGCu -5'
8985 5' -58.7 NC_002512.2 + 114418 0.66 0.889871
Target:  5'- gGCCUgcgagCuCUGCGc--CAGCCGGUUCGc -3'
miRNA:   3'- -UGGAa----G-GACGCcuaGUCGGCCGAGCu -5'
8985 5' -58.7 NC_002512.2 + 77591 0.66 0.889871
Target:  5'- cGCCgagcggUCCcucGCGGAUCGccGCCGGaaCGAc -3'
miRNA:   3'- -UGGa-----AGGa--CGCCUAGU--CGGCCgaGCU- -5'
8985 5' -58.7 NC_002512.2 + 137948 0.66 0.883283
Target:  5'- cACCUgCCUGCGGAaCAGCUcGCg-GAu -3'
miRNA:   3'- -UGGAaGGACGCCUaGUCGGcCGagCU- -5'
8985 5' -58.7 NC_002512.2 + 17922 0.66 0.883283
Target:  5'- gGCCgcgUCCUGaCGGAagCAGCCGacccuCUCGu -3'
miRNA:   3'- -UGGa--AGGAC-GCCUa-GUCGGCc----GAGCu -5'
8985 5' -58.7 NC_002512.2 + 6435 0.66 0.881266
Target:  5'- gGCCgUCUgGCGGGcgccgagacaggggUCGGCCGGCaCGGu -3'
miRNA:   3'- -UGGaAGGaCGCCU--------------AGUCGGCCGaGCU- -5'
8985 5' -58.7 NC_002512.2 + 134369 0.66 0.876489
Target:  5'- gACCUgacgaucugCCUGCGGGUCcugucucuccuGGCCucgaGGCUCc- -3'
miRNA:   3'- -UGGAa--------GGACGCCUAG-----------UCGG----CCGAGcu -5'
8985 5' -58.7 NC_002512.2 + 102310 0.66 0.876489
Target:  5'- cGCCUacaucgCCgaGCGGcUgGGCCGGCUCc- -3'
miRNA:   3'- -UGGAa-----GGa-CGCCuAgUCGGCCGAGcu -5'
8985 5' -58.7 NC_002512.2 + 154595 0.66 0.876489
Target:  5'- cGCCg--CUcCGGAUUGGUCGGUUCGAa -3'
miRNA:   3'- -UGGaagGAcGCCUAGUCGGCCGAGCU- -5'
8985 5' -58.7 NC_002512.2 + 135308 0.66 0.867358
Target:  5'- cGCCUgUCCgGCGGuccccgaggucggcGUCAGCCGcGC-CGGg -3'
miRNA:   3'- -UGGA-AGGaCGCC--------------UAGUCGGC-CGaGCU- -5'
8985 5' -58.7 NC_002512.2 + 135001 0.66 0.862304
Target:  5'- cGCCUacccguucgUCCUGgaGGAUUcgGGCCGGCggaCGGa -3'
miRNA:   3'- -UGGA---------AGGACg-CCUAG--UCGGCCGa--GCU- -5'
8985 5' -58.7 NC_002512.2 + 117716 0.66 0.862304
Target:  5'- uCCgcgCgUGCGGGcUCGagcGCCGGCUCGc -3'
miRNA:   3'- uGGaa-GgACGCCU-AGU---CGGCCGAGCu -5'
8985 5' -58.7 NC_002512.2 + 97159 0.66 0.862304
Target:  5'- cGCUgcgCCUGCGG--CAGCgGGC-CGAg -3'
miRNA:   3'- -UGGaa-GGACGCCuaGUCGgCCGaGCU- -5'
8985 5' -58.7 NC_002512.2 + 20432 0.66 0.862304
Target:  5'- cGCCggagCC-GaaGAUCAGCCGGC-CGAu -3'
miRNA:   3'- -UGGaa--GGaCgcCUAGUCGGCCGaGCU- -5'
8985 5' -58.7 NC_002512.2 + 126582 0.66 0.854923
Target:  5'- gGCCgUCCUGUccuacGA-CGGCCGGCUCc- -3'
miRNA:   3'- -UGGaAGGACGc----CUaGUCGGCCGAGcu -5'
8985 5' -58.7 NC_002512.2 + 39906 0.66 0.854923
Target:  5'- gACCUUCCUGUaGAcCGGUCccgcaGCUCGAa -3'
miRNA:   3'- -UGGAAGGACGcCUaGUCGGc----CGAGCU- -5'
8985 5' -58.7 NC_002512.2 + 12802 0.66 0.854923
Target:  5'- uGCC--CCUGCGGAugcUCGGgCGGCU-GAa -3'
miRNA:   3'- -UGGaaGGACGCCU---AGUCgGCCGAgCU- -5'
8985 5' -58.7 NC_002512.2 + 98556 0.67 0.839609
Target:  5'- gGCgUUCC-GCGGAUcCGGCgGGCgccUCGGg -3'
miRNA:   3'- -UGgAAGGaCGCCUA-GUCGgCCG---AGCU- -5'
8985 5' -58.7 NC_002512.2 + 217119 0.67 0.839609
Target:  5'- cGCCgagUCCUGCGGcggcagCAGCgGGCcCa- -3'
miRNA:   3'- -UGGa--AGGACGCCua----GUCGgCCGaGcu -5'
8985 5' -58.7 NC_002512.2 + 227450 0.67 0.83725
Target:  5'- cACCUUCgcgCUGCcgggggagaggccgGGggCGGCCGGCcgCGAg -3'
miRNA:   3'- -UGGAAG---GACG--------------CCuaGUCGGCCGa-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.