miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8986 3' -62 NC_002512.2 + 137047 0.65 0.81611
Target:  5'- cCGACCGGGGac-GGCCagggaggaggcgCCGCgCCCGg -3'
miRNA:   3'- -GCUGGCCCUgcaCUGGa-----------GGUGgGGGC- -5'
8986 3' -62 NC_002512.2 + 224712 0.66 0.809697
Target:  5'- -uGCUGGGGCc-GGCCgCCGCCCCgGu -3'
miRNA:   3'- gcUGGCCCUGcaCUGGaGGUGGGGgC- -5'
8986 3' -62 NC_002512.2 + 147564 0.66 0.809697
Target:  5'- -cGCCGGGGCGgcccgcgGcCCUCUACaCCCa -3'
miRNA:   3'- gcUGGCCCUGCa------CuGGAGGUGgGGGc -5'
8986 3' -62 NC_002512.2 + 130723 0.66 0.809697
Target:  5'- aGACUGGcGACGUaGACCgagagaUCCGagUCCCCu -3'
miRNA:   3'- gCUGGCC-CUGCA-CUGG------AGGU--GGGGGc -5'
8986 3' -62 NC_002512.2 + 147928 0.66 0.809697
Target:  5'- cCGcCCGGGGCucaccgcgcgccGgccCCUCCGCCCUCGc -3'
miRNA:   3'- -GCuGGCCCUG------------CacuGGAGGUGGGGGC- -5'
8986 3' -62 NC_002512.2 + 198247 0.66 0.809697
Target:  5'- cCGuCCGGGACG--GCCUCCAUguagUgCCGg -3'
miRNA:   3'- -GCuGGCCCUGCacUGGAGGUG----GgGGC- -5'
8986 3' -62 NC_002512.2 + 132543 0.66 0.809697
Target:  5'- gCGGgCGGcGcCGUcGGCCucUCCGCCCUCGa -3'
miRNA:   3'- -GCUgGCC-CuGCA-CUGG--AGGUGGGGGC- -5'
8986 3' -62 NC_002512.2 + 130587 0.66 0.809697
Target:  5'- gCGAgCGGGcggguuccaACGUcGGCCUCCugcucgaCCCCGc -3'
miRNA:   3'- -GCUgGCCC---------UGCA-CUGGAGGug-----GGGGC- -5'
8986 3' -62 NC_002512.2 + 116736 0.66 0.809697
Target:  5'- cCGGCCGcGGCGaGGCCggCGCCCCgCGc -3'
miRNA:   3'- -GCUGGCcCUGCaCUGGagGUGGGG-GC- -5'
8986 3' -62 NC_002512.2 + 75443 0.66 0.809697
Target:  5'- gGAUCGGGGCGgGACgUCCuguauggacGCCgCCa -3'
miRNA:   3'- gCUGGCCCUGCaCUGgAGG---------UGGgGGc -5'
8986 3' -62 NC_002512.2 + 122794 0.66 0.809697
Target:  5'- gGA-CGGGcCGccGACCgacccgaCCGCCCCCGa -3'
miRNA:   3'- gCUgGCCCuGCa-CUGGa------GGUGGGGGC- -5'
8986 3' -62 NC_002512.2 + 40931 0.66 0.804829
Target:  5'- gGAaCGGGACGggggagagggaaccGACCgCCGCgCCCCGc -3'
miRNA:   3'- gCUgGCCCUGCa-------------CUGGaGGUG-GGGGC- -5'
8986 3' -62 NC_002512.2 + 35057 0.66 0.801558
Target:  5'- gGGCCGGGACagcaccacgGUgccGAgCUCCugCUCCa -3'
miRNA:   3'- gCUGGCCCUG---------CA---CUgGAGGugGGGGc -5'
8986 3' -62 NC_002512.2 + 13146 0.66 0.801558
Target:  5'- uCGACCGGGcgcucGCG-GACCUgCGCgCCa- -3'
miRNA:   3'- -GCUGGCCC-----UGCaCUGGAgGUGgGGgc -5'
8986 3' -62 NC_002512.2 + 8473 0.66 0.801558
Target:  5'- gCGGCCGucGGACa-GACCcgCCGCCUCCc -3'
miRNA:   3'- -GCUGGC--CCUGcaCUGGa-GGUGGGGGc -5'
8986 3' -62 NC_002512.2 + 64809 0.66 0.801558
Target:  5'- gCGACgGGcACGU--CCUCUGCCCUCGg -3'
miRNA:   3'- -GCUGgCCcUGCAcuGGAGGUGGGGGC- -5'
8986 3' -62 NC_002512.2 + 117122 0.66 0.801558
Target:  5'- aGGCCaccgugucgcGGGACGgccGGCuCUCCGCCUuCCGc -3'
miRNA:   3'- gCUGG----------CCCUGCa--CUG-GAGGUGGG-GGC- -5'
8986 3' -62 NC_002512.2 + 122656 0.66 0.801558
Target:  5'- uCGAgCCGGacGACgGUGACCgCgGCuCCCCGg -3'
miRNA:   3'- -GCU-GGCC--CUG-CACUGGaGgUG-GGGGC- -5'
8986 3' -62 NC_002512.2 + 54110 0.66 0.801558
Target:  5'- uCGGCCuGcGACGUGACCaccccgcuguUCCGCUgCCUGg -3'
miRNA:   3'- -GCUGGcC-CUGCACUGG----------AGGUGG-GGGC- -5'
8986 3' -62 NC_002512.2 + 45320 0.66 0.801558
Target:  5'- cCGGCCcgcGGGuCGgagGGCCgUCCGCCggCCCGc -3'
miRNA:   3'- -GCUGG---CCCuGCa--CUGG-AGGUGG--GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.