miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8986 5' -56.8 NC_002512.2 + 180311 0.66 0.946856
Target:  5'- aGGCGcagcGGcGUCG-UCAGGUCCC-GCUg -3'
miRNA:   3'- -CCGCu---CCuCGGCaAGUUCAGGGaCGA- -5'
8986 5' -56.8 NC_002512.2 + 80650 0.66 0.946856
Target:  5'- cGGCGGcGGcGCCGggUCcgucGGUCCCgcgGCg -3'
miRNA:   3'- -CCGCU-CCuCGGCa-AGu---UCAGGGa--CGa -5'
8986 5' -56.8 NC_002512.2 + 223919 0.66 0.946856
Target:  5'- gGGCGAGaggucGAGCCGgaCGGGgaggucgaUCCCUGg- -3'
miRNA:   3'- -CCGCUC-----CUCGGCaaGUUC--------AGGGACga -5'
8986 5' -56.8 NC_002512.2 + 107219 0.66 0.946856
Target:  5'- cGGcCGGGGAGCCGcggUCAccgucGUCCg-GCUc -3'
miRNA:   3'- -CC-GCUCCUCGGCa--AGUu----CAGGgaCGA- -5'
8986 5' -56.8 NC_002512.2 + 159888 0.66 0.942542
Target:  5'- gGGgGuGGAGgUGUgUCGAcggcucuuGUCCCUGCUg -3'
miRNA:   3'- -CCgCuCCUCgGCA-AGUU--------CAGGGACGA- -5'
8986 5' -56.8 NC_002512.2 + 48701 0.66 0.942542
Target:  5'- gGGCGAGGAccaCgCGUUCGAcUCcuaCCUGCUg -3'
miRNA:   3'- -CCGCUCCUc--G-GCAAGUUcAG---GGACGA- -5'
8986 5' -56.8 NC_002512.2 + 127292 0.66 0.942542
Target:  5'- cGGCGAGGAGaggaggaaacgCGUgcgCGAGaCCCUGg- -3'
miRNA:   3'- -CCGCUCCUCg----------GCAa--GUUCaGGGACga -5'
8986 5' -56.8 NC_002512.2 + 124961 0.66 0.942098
Target:  5'- cGGaCGAGGAgGCCGUcgCGGacuucgccaaccuGUCCCUGg- -3'
miRNA:   3'- -CC-GCUCCU-CGGCAa-GUU-------------CAGGGACga -5'
8986 5' -56.8 NC_002512.2 + 196177 0.66 0.942098
Target:  5'- gGGCGAgcccgagGGGGCgaCGgcCGGGUCCCUgGCg -3'
miRNA:   3'- -CCGCU-------CCUCG--GCaaGUUCAGGGA-CGa -5'
8986 5' -56.8 NC_002512.2 + 109047 0.66 0.938006
Target:  5'- aGGgGAGGAaguacgcgucGCCcagCAGGUCCCcGCg -3'
miRNA:   3'- -CCgCUCCU----------CGGcaaGUUCAGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 189911 0.66 0.933248
Target:  5'- cGGCGAGGAcgGCgGcUCcGGUCUCgGCg -3'
miRNA:   3'- -CCGCUCCU--CGgCaAGuUCAGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 164258 0.66 0.933248
Target:  5'- uGGCG-GGGGCCG-UCGGGUCgaucgCCUcggGCUu -3'
miRNA:   3'- -CCGCuCCUCGGCaAGUUCAG-----GGA---CGA- -5'
8986 5' -56.8 NC_002512.2 + 116892 0.66 0.931777
Target:  5'- uGGCGGcGGGGCCGgggCGGgcuccucggacggcGUCCCcgGCUu -3'
miRNA:   3'- -CCGCU-CCUCGGCaa-GUU--------------CAGGGa-CGA- -5'
8986 5' -56.8 NC_002512.2 + 159359 0.66 0.92359
Target:  5'- cGGCGucGGGGUCGgggcgucccauucgCGGGUCCCgcgGCg -3'
miRNA:   3'- -CCGCu-CCUCGGCaa------------GUUCAGGGa--CGa -5'
8986 5' -56.8 NC_002512.2 + 135807 0.66 0.923059
Target:  5'- cGGCGGGGAcGCCGac--GGUCCCg--- -3'
miRNA:   3'- -CCGCUCCU-CGGCaaguUCAGGGacga -5'
8986 5' -56.8 NC_002512.2 + 81946 0.66 0.923059
Target:  5'- gGGCgGAGGGGCCGgcgcgcggUGAGcCCCggGCg -3'
miRNA:   3'- -CCG-CUCCUCGGCaa------GUUCaGGGa-CGa -5'
8986 5' -56.8 NC_002512.2 + 96881 0.67 0.917628
Target:  5'- cGGCGcacuucccGGGGGCCGggUuc--CCCUGCUa -3'
miRNA:   3'- -CCGC--------UCCUCGGCaaGuucaGGGACGA- -5'
8986 5' -56.8 NC_002512.2 + 133878 0.67 0.917628
Target:  5'- cGGCucGAGGAGCgGcUCGgccggcGGUCCCggGCg -3'
miRNA:   3'- -CCG--CUCCUCGgCaAGU------UCAGGGa-CGa -5'
8986 5' -56.8 NC_002512.2 + 221616 0.67 0.917072
Target:  5'- cGGCGAGGAGggagcggguccacCCGgc--GG-CCCUGCUc -3'
miRNA:   3'- -CCGCUCCUC-------------GGCaaguUCaGGGACGA- -5'
8986 5' -56.8 NC_002512.2 + 113278 0.67 0.906096
Target:  5'- cGGCGGGGcAGCCGcggCGGGccUCCC-GCc -3'
miRNA:   3'- -CCGCUCC-UCGGCaa-GUUC--AGGGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.