miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8986 5' -56.8 NC_002512.2 + 190481 1.09 0.003564
Target:  5'- cGGCGAGGAGCCGUUCAAGUCCCUGCUc -3'
miRNA:   3'- -CCGCUCCUCGGCAAGUUCAGGGACGA- -5'
8986 5' -56.8 NC_002512.2 + 122683 0.76 0.467253
Target:  5'- cGGCGAGGGGCCcgggcgaGUUCAAGgugaUCCCgcacgGCa -3'
miRNA:   3'- -CCGCUCCUCGG-------CAAGUUC----AGGGa----CGa -5'
8986 5' -56.8 NC_002512.2 + 188486 0.75 0.477254
Target:  5'- aGCGAGGAGCCGUUCA---CCC-GCa -3'
miRNA:   3'- cCGCUCCUCGGCAAGUucaGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 53108 0.73 0.621628
Target:  5'- cGCGGGcGAGCUGUccCGAG-CCCUGCa -3'
miRNA:   3'- cCGCUC-CUCGGCAa-GUUCaGGGACGa -5'
8986 5' -56.8 NC_002512.2 + 82467 0.73 0.611721
Target:  5'- aGGCGGGGAaggggcccagacGCCGUUUGacgccGGUCCuCUGCa -3'
miRNA:   3'- -CCGCUCCU------------CGGCAAGU-----UCAGG-GACGa -5'
8986 5' -56.8 NC_002512.2 + 32904 0.72 0.690778
Target:  5'- gGGCGAacuGGGGCCGaUUCGAGUaCCUGg- -3'
miRNA:   3'- -CCGCU---CCUCGGC-AAGUUCAgGGACga -5'
8986 5' -56.8 NC_002512.2 + 204731 0.71 0.729455
Target:  5'- gGGCGGGGGGCCGgaccCGGGUgCUCaGCg -3'
miRNA:   3'- -CCGCUCCUCGGCaa--GUUCA-GGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 82407 0.71 0.719883
Target:  5'- cGCgGGGGAGCCGgu--GGUCCCgcgGCg -3'
miRNA:   3'- cCG-CUCCUCGGCaaguUCAGGGa--CGa -5'
8986 5' -56.8 NC_002512.2 + 124564 0.7 0.784933
Target:  5'- cGGCGAGGAGgaggcCCGggacgUCAAGagcgacgCCCUGUc -3'
miRNA:   3'- -CCGCUCCUC-----GGCa----AGUUCa------GGGACGa -5'
8986 5' -56.8 NC_002512.2 + 186724 0.7 0.784933
Target:  5'- gGGCGAGGAGUCGgcCAAcGUCgCggGCa -3'
miRNA:   3'- -CCGCUCCUCGGCaaGUU-CAGgGa-CGa -5'
8986 5' -56.8 NC_002512.2 + 217108 0.69 0.811044
Target:  5'- aGCGGGGGcGCCGc-CGAGUCCUgcgGCg -3'
miRNA:   3'- cCGCUCCU-CGGCaaGUUCAGGGa--CGa -5'
8986 5' -56.8 NC_002512.2 + 117118 0.69 0.819453
Target:  5'- aGCGGcacGGGGCCccgucggcggcGUUCGAGUCgCUGCa -3'
miRNA:   3'- cCGCU---CCUCGG-----------CAAGUUCAGgGACGa -5'
8986 5' -56.8 NC_002512.2 + 80496 0.69 0.802483
Target:  5'- cGuCGAGGAGCCGgagUCcugcGUCCCcGCg -3'
miRNA:   3'- cC-GCUCCUCGGCa--AGuu--CAGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 179555 0.69 0.818619
Target:  5'- uGGCGcagcauGGGAGCCGUUCAuagaacuuuuaggGGUCUCUa-- -3'
miRNA:   3'- -CCGC------UCCUCGGCAAGU-------------UCAGGGAcga -5'
8986 5' -56.8 NC_002512.2 + 24328 0.69 0.827703
Target:  5'- cGGCGGucGGGCUGUugauguUCAAG-CCCUGCa -3'
miRNA:   3'- -CCGCUc-CUCGGCA------AGUUCaGGGACGa -5'
8986 5' -56.8 NC_002512.2 + 45786 0.69 0.834984
Target:  5'- gGGCGAacugcacccgccgGGGGCCGUgcugCGGuUCCUUGCg -3'
miRNA:   3'- -CCGCU-------------CCUCGGCAa---GUUcAGGGACGa -5'
8986 5' -56.8 NC_002512.2 + 100309 0.69 0.835785
Target:  5'- gGGCGAcGGGGCCGac---GUCCCgGCg -3'
miRNA:   3'- -CCGCU-CCUCGGCaaguuCAGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 8325 0.69 0.835785
Target:  5'- gGGCcGGGAGCCGgagaccgCGGGUCCg-GCg -3'
miRNA:   3'- -CCGcUCCUCGGCaa-----GUUCAGGgaCGa -5'
8986 5' -56.8 NC_002512.2 + 119414 0.69 0.819453
Target:  5'- --gGAGGAGCUGaaCAAGcugacggCCCUGCUg -3'
miRNA:   3'- ccgCUCCUCGGCaaGUUCa------GGGACGA- -5'
8986 5' -56.8 NC_002512.2 + 137224 0.68 0.87205
Target:  5'- cGGCGcGGGcGGCCGUcccggauccgcgCGGGUCCCgGCg -3'
miRNA:   3'- -CCGC-UCC-UCGGCAa-----------GUUCAGGGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.