miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8986 5' -56.8 NC_002512.2 + 114493 0.68 0.856721
Target:  5'- cGGCGAcGGAGCUGcugUCGaagaucgacgucccGGUCgaCCUGCUg -3'
miRNA:   3'- -CCGCU-CCUCGGCa--AGU--------------UCAG--GGACGA- -5'
8986 5' -56.8 NC_002512.2 + 121227 0.68 0.861926
Target:  5'- cGGCGGGGAGuacauguggaccgccCCGU--GGGUCCCguUGCa -3'
miRNA:   3'- -CCGCUCCUC---------------GGCAagUUCAGGG--ACGa -5'
8986 5' -56.8 NC_002512.2 + 4225 0.68 0.866312
Target:  5'- cGCGGGGAGCgGgacgUCGAGcCCCgacggGUg -3'
miRNA:   3'- cCGCUCCUCGgCa---AGUUCaGGGa----CGa -5'
8986 5' -56.8 NC_002512.2 + 10312 0.68 0.866312
Target:  5'- aGGaCGuAGGAGCCGUcgCAcacGUCCCcgGCg -3'
miRNA:   3'- -CC-GC-UCCUCGGCAa-GUu--CAGGGa-CGa -5'
8986 5' -56.8 NC_002512.2 + 137224 0.68 0.87205
Target:  5'- cGGCGcGGGcGGCCGUcccggauccgcgCGGGUCCCgGCg -3'
miRNA:   3'- -CCGC-UCC-UCGGCAa-----------GUUCAGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 108437 0.68 0.873464
Target:  5'- gGGCcGGGGGCCGgg-GGGUCCCUccccggGCg -3'
miRNA:   3'- -CCGcUCCUCGGCaagUUCAGGGA------CGa -5'
8986 5' -56.8 NC_002512.2 + 220688 0.68 0.873464
Target:  5'- gGGCGAcGGGaCGgaggUC-AGUCCCUGCg -3'
miRNA:   3'- -CCGCUcCUCgGCa---AGuUCAGGGACGa -5'
8986 5' -56.8 NC_002512.2 + 188394 0.68 0.880412
Target:  5'- uGGCGGGGAGCCucagCGAGguUCCCg--- -3'
miRNA:   3'- -CCGCUCCUCGGcaa-GUUC--AGGGacga -5'
8986 5' -56.8 NC_002512.2 + 59010 0.68 0.880412
Target:  5'- cGGCGAGGAGCCGcUCAuagagggcGUCgagGCg -3'
miRNA:   3'- -CCGCUCCUCGGCaAGUu-------CAGggaCGa -5'
8986 5' -56.8 NC_002512.2 + 119566 0.67 0.887154
Target:  5'- gGGCGgaccgcGGGAGCCcggCGGGUCCCcucGCg -3'
miRNA:   3'- -CCGC------UCCUCGGcaaGUUCAGGGa--CGa -5'
8986 5' -56.8 NC_002512.2 + 31822 0.67 0.887154
Target:  5'- cGGuCGAGGGGaCGcgCGAgacGUCCCUGUg -3'
miRNA:   3'- -CC-GCUCCUCgGCaaGUU---CAGGGACGa -5'
8986 5' -56.8 NC_002512.2 + 48567 0.67 0.899999
Target:  5'- cGGCGGcuGGAGCUGUaccggagccUgGuGUCCCUGUa -3'
miRNA:   3'- -CCGCU--CCUCGGCA---------AgUuCAGGGACGa -5'
8986 5' -56.8 NC_002512.2 + 134167 0.67 0.899999
Target:  5'- gGGaCGGGGAGCCGUcuUCcccUCCCgGCc -3'
miRNA:   3'- -CC-GCUCCUCGGCA--AGuucAGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 208676 0.67 0.899999
Target:  5'- cGGCGucccGGGGGCCGcu---GUCCCUGg- -3'
miRNA:   3'- -CCGC----UCCUCGGCaaguuCAGGGACga -5'
8986 5' -56.8 NC_002512.2 + 113278 0.67 0.906096
Target:  5'- cGGCGGGGcAGCCGcggCGGGccUCCC-GCc -3'
miRNA:   3'- -CCGCUCC-UCGGCaa-GUUC--AGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 221616 0.67 0.917072
Target:  5'- cGGCGAGGAGggagcggguccacCCGgc--GG-CCCUGCUc -3'
miRNA:   3'- -CCGCUCCUC-------------GGCaaguUCaGGGACGA- -5'
8986 5' -56.8 NC_002512.2 + 133878 0.67 0.917628
Target:  5'- cGGCucGAGGAGCgGcUCGgccggcGGUCCCggGCg -3'
miRNA:   3'- -CCG--CUCCUCGgCaAGU------UCAGGGa-CGa -5'
8986 5' -56.8 NC_002512.2 + 96881 0.67 0.917628
Target:  5'- cGGCGcacuucccGGGGGCCGggUuc--CCCUGCUa -3'
miRNA:   3'- -CCGC--------UCCUCGGCaaGuucaGGGACGA- -5'
8986 5' -56.8 NC_002512.2 + 135807 0.66 0.923059
Target:  5'- cGGCGGGGAcGCCGac--GGUCCCg--- -3'
miRNA:   3'- -CCGCUCCU-CGGCaaguUCAGGGacga -5'
8986 5' -56.8 NC_002512.2 + 81946 0.66 0.923059
Target:  5'- gGGCgGAGGGGCCGgcgcgcggUGAGcCCCggGCg -3'
miRNA:   3'- -CCG-CUCCUCGGCaa------GUUCaGGGa-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.