miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8986 5' -56.8 NC_002512.2 + 4225 0.68 0.866312
Target:  5'- cGCGGGGAGCgGgacgUCGAGcCCCgacggGUg -3'
miRNA:   3'- cCGCUCCUCGgCa---AGUUCaGGGa----CGa -5'
8986 5' -56.8 NC_002512.2 + 8325 0.69 0.835785
Target:  5'- gGGCcGGGAGCCGgagaccgCGGGUCCg-GCg -3'
miRNA:   3'- -CCGcUCCUCGGCaa-----GUUCAGGgaCGa -5'
8986 5' -56.8 NC_002512.2 + 10312 0.68 0.866312
Target:  5'- aGGaCGuAGGAGCCGUcgCAcacGUCCCcgGCg -3'
miRNA:   3'- -CC-GC-UCCUCGGCAa-GUu--CAGGGa-CGa -5'
8986 5' -56.8 NC_002512.2 + 24328 0.69 0.827703
Target:  5'- cGGCGGucGGGCUGUugauguUCAAG-CCCUGCa -3'
miRNA:   3'- -CCGCUc-CUCGGCA------AGUUCaGGGACGa -5'
8986 5' -56.8 NC_002512.2 + 31822 0.67 0.887154
Target:  5'- cGGuCGAGGGGaCGcgCGAgacGUCCCUGUg -3'
miRNA:   3'- -CC-GCUCCUCgGCaaGUU---CAGGGACGa -5'
8986 5' -56.8 NC_002512.2 + 32904 0.72 0.690778
Target:  5'- gGGCGAacuGGGGCCGaUUCGAGUaCCUGg- -3'
miRNA:   3'- -CCGCU---CCUCGGC-AAGUUCAgGGACga -5'
8986 5' -56.8 NC_002512.2 + 45786 0.69 0.834984
Target:  5'- gGGCGAacugcacccgccgGGGGCCGUgcugCGGuUCCUUGCg -3'
miRNA:   3'- -CCGCU-------------CCUCGGCAa---GUUcAGGGACGa -5'
8986 5' -56.8 NC_002512.2 + 48567 0.67 0.899999
Target:  5'- cGGCGGcuGGAGCUGUaccggagccUgGuGUCCCUGUa -3'
miRNA:   3'- -CCGCU--CCUCGGCA---------AgUuCAGGGACGa -5'
8986 5' -56.8 NC_002512.2 + 48701 0.66 0.942542
Target:  5'- gGGCGAGGAccaCgCGUUCGAcUCcuaCCUGCUg -3'
miRNA:   3'- -CCGCUCCUc--G-GCAAGUUcAG---GGACGA- -5'
8986 5' -56.8 NC_002512.2 + 53108 0.73 0.621628
Target:  5'- cGCGGGcGAGCUGUccCGAG-CCCUGCa -3'
miRNA:   3'- cCGCUC-CUCGGCAa-GUUCaGGGACGa -5'
8986 5' -56.8 NC_002512.2 + 59010 0.68 0.880412
Target:  5'- cGGCGAGGAGCCGcUCAuagagggcGUCgagGCg -3'
miRNA:   3'- -CCGCUCCUCGGCaAGUu-------CAGggaCGa -5'
8986 5' -56.8 NC_002512.2 + 80496 0.69 0.802483
Target:  5'- cGuCGAGGAGCCGgagUCcugcGUCCCcGCg -3'
miRNA:   3'- cC-GCUCCUCGGCa--AGuu--CAGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 80650 0.66 0.946856
Target:  5'- cGGCGGcGGcGCCGggUCcgucGGUCCCgcgGCg -3'
miRNA:   3'- -CCGCU-CCuCGGCa-AGu---UCAGGGa--CGa -5'
8986 5' -56.8 NC_002512.2 + 81946 0.66 0.923059
Target:  5'- gGGCgGAGGGGCCGgcgcgcggUGAGcCCCggGCg -3'
miRNA:   3'- -CCG-CUCCUCGGCaa------GUUCaGGGa-CGa -5'
8986 5' -56.8 NC_002512.2 + 82407 0.71 0.719883
Target:  5'- cGCgGGGGAGCCGgu--GGUCCCgcgGCg -3'
miRNA:   3'- cCG-CUCCUCGGCaaguUCAGGGa--CGa -5'
8986 5' -56.8 NC_002512.2 + 82467 0.73 0.611721
Target:  5'- aGGCGGGGAaggggcccagacGCCGUUUGacgccGGUCCuCUGCa -3'
miRNA:   3'- -CCGCUCCU------------CGGCAAGU-----UCAGG-GACGa -5'
8986 5' -56.8 NC_002512.2 + 96881 0.67 0.917628
Target:  5'- cGGCGcacuucccGGGGGCCGggUuc--CCCUGCUa -3'
miRNA:   3'- -CCGC--------UCCUCGGCaaGuucaGGGACGA- -5'
8986 5' -56.8 NC_002512.2 + 100309 0.69 0.835785
Target:  5'- gGGCGAcGGGGCCGac---GUCCCgGCg -3'
miRNA:   3'- -CCGCU-CCUCGGCaaguuCAGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 107219 0.66 0.946856
Target:  5'- cGGcCGGGGAGCCGcggUCAccgucGUCCg-GCUc -3'
miRNA:   3'- -CC-GCUCCUCGGCa--AGUu----CAGGgaCGA- -5'
8986 5' -56.8 NC_002512.2 + 108437 0.68 0.873464
Target:  5'- gGGCcGGGGGCCGgg-GGGUCCCUccccggGCg -3'
miRNA:   3'- -CCGcUCCUCGGCaagUUCAGGGA------CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.