miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8986 5' -56.8 NC_002512.2 + 223919 0.66 0.946856
Target:  5'- gGGCGAGaggucGAGCCGgaCGGGgaggucgaUCCCUGg- -3'
miRNA:   3'- -CCGCUC-----CUCGGCaaGUUC--------AGGGACga -5'
8986 5' -56.8 NC_002512.2 + 221616 0.67 0.917072
Target:  5'- cGGCGAGGAGggagcggguccacCCGgc--GG-CCCUGCUc -3'
miRNA:   3'- -CCGCUCCUC-------------GGCaaguUCaGGGACGA- -5'
8986 5' -56.8 NC_002512.2 + 220688 0.68 0.873464
Target:  5'- gGGCGAcGGGaCGgaggUC-AGUCCCUGCg -3'
miRNA:   3'- -CCGCUcCUCgGCa---AGuUCAGGGACGa -5'
8986 5' -56.8 NC_002512.2 + 217108 0.69 0.811044
Target:  5'- aGCGGGGGcGCCGc-CGAGUCCUgcgGCg -3'
miRNA:   3'- cCGCUCCU-CGGCaaGUUCAGGGa--CGa -5'
8986 5' -56.8 NC_002512.2 + 208676 0.67 0.899999
Target:  5'- cGGCGucccGGGGGCCGcu---GUCCCUGg- -3'
miRNA:   3'- -CCGC----UCCUCGGCaaguuCAGGGACga -5'
8986 5' -56.8 NC_002512.2 + 204731 0.71 0.729455
Target:  5'- gGGCGGGGGGCCGgaccCGGGUgCUCaGCg -3'
miRNA:   3'- -CCGCUCCUCGGCaa--GUUCA-GGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 196177 0.66 0.942098
Target:  5'- gGGCGAgcccgagGGGGCgaCGgcCGGGUCCCUgGCg -3'
miRNA:   3'- -CCGCU-------CCUCG--GCaaGUUCAGGGA-CGa -5'
8986 5' -56.8 NC_002512.2 + 190481 1.09 0.003564
Target:  5'- cGGCGAGGAGCCGUUCAAGUCCCUGCUc -3'
miRNA:   3'- -CCGCUCCUCGGCAAGUUCAGGGACGA- -5'
8986 5' -56.8 NC_002512.2 + 189911 0.66 0.933248
Target:  5'- cGGCGAGGAcgGCgGcUCcGGUCUCgGCg -3'
miRNA:   3'- -CCGCUCCU--CGgCaAGuUCAGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 188486 0.75 0.477254
Target:  5'- aGCGAGGAGCCGUUCA---CCC-GCa -3'
miRNA:   3'- cCGCUCCUCGGCAAGUucaGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 188394 0.68 0.880412
Target:  5'- uGGCGGGGAGCCucagCGAGguUCCCg--- -3'
miRNA:   3'- -CCGCUCCUCGGcaa-GUUC--AGGGacga -5'
8986 5' -56.8 NC_002512.2 + 186724 0.7 0.784933
Target:  5'- gGGCGAGGAGUCGgcCAAcGUCgCggGCa -3'
miRNA:   3'- -CCGCUCCUCGGCaaGUU-CAGgGa-CGa -5'
8986 5' -56.8 NC_002512.2 + 180311 0.66 0.946856
Target:  5'- aGGCGcagcGGcGUCG-UCAGGUCCC-GCUg -3'
miRNA:   3'- -CCGCu---CCuCGGCaAGUUCAGGGaCGA- -5'
8986 5' -56.8 NC_002512.2 + 179555 0.69 0.818619
Target:  5'- uGGCGcagcauGGGAGCCGUUCAuagaacuuuuaggGGUCUCUa-- -3'
miRNA:   3'- -CCGC------UCCUCGGCAAGU-------------UCAGGGAcga -5'
8986 5' -56.8 NC_002512.2 + 164258 0.66 0.933248
Target:  5'- uGGCG-GGGGCCG-UCGGGUCgaucgCCUcggGCUu -3'
miRNA:   3'- -CCGCuCCUCGGCaAGUUCAG-----GGA---CGA- -5'
8986 5' -56.8 NC_002512.2 + 159888 0.66 0.942542
Target:  5'- gGGgGuGGAGgUGUgUCGAcggcucuuGUCCCUGCUg -3'
miRNA:   3'- -CCgCuCCUCgGCA-AGUU--------CAGGGACGA- -5'
8986 5' -56.8 NC_002512.2 + 159359 0.66 0.92359
Target:  5'- cGGCGucGGGGUCGgggcgucccauucgCGGGUCCCgcgGCg -3'
miRNA:   3'- -CCGCu-CCUCGGCaa------------GUUCAGGGa--CGa -5'
8986 5' -56.8 NC_002512.2 + 137224 0.68 0.87205
Target:  5'- cGGCGcGGGcGGCCGUcccggauccgcgCGGGUCCCgGCg -3'
miRNA:   3'- -CCGC-UCC-UCGGCAa-----------GUUCAGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 135807 0.66 0.923059
Target:  5'- cGGCGGGGAcGCCGac--GGUCCCg--- -3'
miRNA:   3'- -CCGCUCCU-CGGCaaguUCAGGGacga -5'
8986 5' -56.8 NC_002512.2 + 134167 0.67 0.899999
Target:  5'- gGGaCGGGGAGCCGUcuUCcccUCCCgGCc -3'
miRNA:   3'- -CC-GCUCCUCGGCA--AGuucAGGGaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.