miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8986 5' -56.8 NC_002512.2 + 133878 0.67 0.917628
Target:  5'- cGGCucGAGGAGCgGcUCGgccggcGGUCCCggGCg -3'
miRNA:   3'- -CCG--CUCCUCGgCaAGU------UCAGGGa-CGa -5'
8986 5' -56.8 NC_002512.2 + 127292 0.66 0.942542
Target:  5'- cGGCGAGGAGaggaggaaacgCGUgcgCGAGaCCCUGg- -3'
miRNA:   3'- -CCGCUCCUCg----------GCAa--GUUCaGGGACga -5'
8986 5' -56.8 NC_002512.2 + 126825 0.68 0.851422
Target:  5'- uGCGAGGuGCCGUUCcccgcgCuCCUGCc -3'
miRNA:   3'- cCGCUCCuCGGCAAGuuca--G-GGACGa -5'
8986 5' -56.8 NC_002512.2 + 124961 0.66 0.942098
Target:  5'- cGGaCGAGGAgGCCGUcgCGGacuucgccaaccuGUCCCUGg- -3'
miRNA:   3'- -CC-GCUCCU-CGGCAa-GUU-------------CAGGGACga -5'
8986 5' -56.8 NC_002512.2 + 124564 0.7 0.784933
Target:  5'- cGGCGAGGAGgaggcCCGggacgUCAAGagcgacgCCCUGUc -3'
miRNA:   3'- -CCGCUCCUC-----GGCa----AGUUCa------GGGACGa -5'
8986 5' -56.8 NC_002512.2 + 122683 0.76 0.467253
Target:  5'- cGGCGAGGGGCCcgggcgaGUUCAAGgugaUCCCgcacgGCa -3'
miRNA:   3'- -CCGCUCCUCGG-------CAAGUUC----AGGGa----CGa -5'
8986 5' -56.8 NC_002512.2 + 121227 0.68 0.861926
Target:  5'- cGGCGGGGAGuacauguggaccgccCCGU--GGGUCCCguUGCa -3'
miRNA:   3'- -CCGCUCCUC---------------GGCAagUUCAGGG--ACGa -5'
8986 5' -56.8 NC_002512.2 + 119566 0.67 0.887154
Target:  5'- gGGCGgaccgcGGGAGCCcggCGGGUCCCcucGCg -3'
miRNA:   3'- -CCGC------UCCUCGGcaaGUUCAGGGa--CGa -5'
8986 5' -56.8 NC_002512.2 + 119414 0.69 0.819453
Target:  5'- --gGAGGAGCUGaaCAAGcugacggCCCUGCUg -3'
miRNA:   3'- ccgCUCCUCGGCaaGUUCa------GGGACGA- -5'
8986 5' -56.8 NC_002512.2 + 117118 0.69 0.819453
Target:  5'- aGCGGcacGGGGCCccgucggcggcGUUCGAGUCgCUGCa -3'
miRNA:   3'- cCGCU---CCUCGG-----------CAAGUUCAGgGACGa -5'
8986 5' -56.8 NC_002512.2 + 116892 0.66 0.931777
Target:  5'- uGGCGGcGGGGCCGgggCGGgcuccucggacggcGUCCCcgGCUu -3'
miRNA:   3'- -CCGCU-CCUCGGCaa-GUU--------------CAGGGa-CGA- -5'
8986 5' -56.8 NC_002512.2 + 114493 0.68 0.856721
Target:  5'- cGGCGAcGGAGCUGcugUCGaagaucgacgucccGGUCgaCCUGCUg -3'
miRNA:   3'- -CCGCU-CCUCGGCa--AGU--------------UCAG--GGACGA- -5'
8986 5' -56.8 NC_002512.2 + 113278 0.67 0.906096
Target:  5'- cGGCGGGGcAGCCGcggCGGGccUCCC-GCc -3'
miRNA:   3'- -CCGCUCC-UCGGCaa-GUUC--AGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 109047 0.66 0.938006
Target:  5'- aGGgGAGGAaguacgcgucGCCcagCAGGUCCCcGCg -3'
miRNA:   3'- -CCgCUCCU----------CGGcaaGUUCAGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 108437 0.68 0.873464
Target:  5'- gGGCcGGGGGCCGgg-GGGUCCCUccccggGCg -3'
miRNA:   3'- -CCGcUCCUCGGCaagUUCAGGGA------CGa -5'
8986 5' -56.8 NC_002512.2 + 107219 0.66 0.946856
Target:  5'- cGGcCGGGGAGCCGcggUCAccgucGUCCg-GCUc -3'
miRNA:   3'- -CC-GCUCCUCGGCa--AGUu----CAGGgaCGA- -5'
8986 5' -56.8 NC_002512.2 + 100309 0.69 0.835785
Target:  5'- gGGCGAcGGGGCCGac---GUCCCgGCg -3'
miRNA:   3'- -CCGCU-CCUCGGCaaguuCAGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 96881 0.67 0.917628
Target:  5'- cGGCGcacuucccGGGGGCCGggUuc--CCCUGCUa -3'
miRNA:   3'- -CCGC--------UCCUCGGCaaGuucaGGGACGA- -5'
8986 5' -56.8 NC_002512.2 + 82467 0.73 0.611721
Target:  5'- aGGCGGGGAaggggcccagacGCCGUUUGacgccGGUCCuCUGCa -3'
miRNA:   3'- -CCGCUCCU------------CGGCAAGU-----UCAGG-GACGa -5'
8986 5' -56.8 NC_002512.2 + 82407 0.71 0.719883
Target:  5'- cGCgGGGGAGCCGgu--GGUCCCgcgGCg -3'
miRNA:   3'- cCG-CUCCUCGGCaaguUCAGGGa--CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.