miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8986 5' -56.8 NC_002512.2 + 32904 0.72 0.690778
Target:  5'- gGGCGAacuGGGGCCGaUUCGAGUaCCUGg- -3'
miRNA:   3'- -CCGCU---CCUCGGC-AAGUUCAgGGACga -5'
8986 5' -56.8 NC_002512.2 + 159359 0.66 0.92359
Target:  5'- cGGCGucGGGGUCGgggcgucccauucgCGGGUCCCgcgGCg -3'
miRNA:   3'- -CCGCu-CCUCGGCaa------------GUUCAGGGa--CGa -5'
8986 5' -56.8 NC_002512.2 + 114493 0.68 0.856721
Target:  5'- cGGCGAcGGAGCUGcugUCGaagaucgacgucccGGUCgaCCUGCUg -3'
miRNA:   3'- -CCGCU-CCUCGGCa--AGU--------------UCAG--GGACGA- -5'
8986 5' -56.8 NC_002512.2 + 217108 0.69 0.811044
Target:  5'- aGCGGGGGcGCCGc-CGAGUCCUgcgGCg -3'
miRNA:   3'- cCGCUCCU-CGGCaaGUUCAGGGa--CGa -5'
8986 5' -56.8 NC_002512.2 + 188486 0.75 0.477254
Target:  5'- aGCGAGGAGCCGUUCA---CCC-GCa -3'
miRNA:   3'- cCGCUCCUCGGCAAGUucaGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 119566 0.67 0.887154
Target:  5'- gGGCGgaccgcGGGAGCCcggCGGGUCCCcucGCg -3'
miRNA:   3'- -CCGC------UCCUCGGcaaGUUCAGGGa--CGa -5'
8986 5' -56.8 NC_002512.2 + 119414 0.69 0.819453
Target:  5'- --gGAGGAGCUGaaCAAGcugacggCCCUGCUg -3'
miRNA:   3'- ccgCUCCUCGGCaaGUUCa------GGGACGA- -5'
8986 5' -56.8 NC_002512.2 + 80650 0.66 0.946856
Target:  5'- cGGCGGcGGcGCCGggUCcgucGGUCCCgcgGCg -3'
miRNA:   3'- -CCGCU-CCuCGGCa-AGu---UCAGGGa--CGa -5'
8986 5' -56.8 NC_002512.2 + 82407 0.71 0.719883
Target:  5'- cGCgGGGGAGCCGgu--GGUCCCgcgGCg -3'
miRNA:   3'- cCG-CUCCUCGGCaaguUCAGGGa--CGa -5'
8986 5' -56.8 NC_002512.2 + 137224 0.68 0.87205
Target:  5'- cGGCGcGGGcGGCCGUcccggauccgcgCGGGUCCCgGCg -3'
miRNA:   3'- -CCGC-UCC-UCGGCAa-----------GUUCAGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 4225 0.68 0.866312
Target:  5'- cGCGGGGAGCgGgacgUCGAGcCCCgacggGUg -3'
miRNA:   3'- cCGCUCCUCGgCa---AGUUCaGGGa----CGa -5'
8986 5' -56.8 NC_002512.2 + 179555 0.69 0.818619
Target:  5'- uGGCGcagcauGGGAGCCGUUCAuagaacuuuuaggGGUCUCUa-- -3'
miRNA:   3'- -CCGC------UCCUCGGCAAGU-------------UCAGGGAcga -5'
8986 5' -56.8 NC_002512.2 + 81946 0.66 0.923059
Target:  5'- gGGCgGAGGGGCCGgcgcgcggUGAGcCCCggGCg -3'
miRNA:   3'- -CCG-CUCCUCGGCaa------GUUCaGGGa-CGa -5'
8986 5' -56.8 NC_002512.2 + 24328 0.69 0.827703
Target:  5'- cGGCGGucGGGCUGUugauguUCAAG-CCCUGCa -3'
miRNA:   3'- -CCGCUc-CUCGGCA------AGUUCaGGGACGa -5'
8986 5' -56.8 NC_002512.2 + 116892 0.66 0.931777
Target:  5'- uGGCGGcGGGGCCGgggCGGgcuccucggacggcGUCCCcgGCUu -3'
miRNA:   3'- -CCGCU-CCUCGGCaa-GUU--------------CAGGGa-CGA- -5'
8986 5' -56.8 NC_002512.2 + 109047 0.66 0.938006
Target:  5'- aGGgGAGGAaguacgcgucGCCcagCAGGUCCCcGCg -3'
miRNA:   3'- -CCgCUCCU----------CGGcaaGUUCAGGGaCGa -5'
8986 5' -56.8 NC_002512.2 + 48701 0.66 0.942542
Target:  5'- gGGCGAGGAccaCgCGUUCGAcUCcuaCCUGCUg -3'
miRNA:   3'- -CCGCUCCUc--G-GCAAGUUcAG---GGACGA- -5'
8986 5' -56.8 NC_002512.2 + 127292 0.66 0.942542
Target:  5'- cGGCGAGGAGaggaggaaacgCGUgcgCGAGaCCCUGg- -3'
miRNA:   3'- -CCGCUCCUCg----------GCAa--GUUCaGGGACga -5'
8986 5' -56.8 NC_002512.2 + 121227 0.68 0.861926
Target:  5'- cGGCGGGGAGuacauguggaccgccCCGU--GGGUCCCguUGCa -3'
miRNA:   3'- -CCGCUCCUC---------------GGCAagUUCAGGG--ACGa -5'
8986 5' -56.8 NC_002512.2 + 10312 0.68 0.866312
Target:  5'- aGGaCGuAGGAGCCGUcgCAcacGUCCCcgGCg -3'
miRNA:   3'- -CC-GC-UCCUCGGCAa-GUu--CAGGGa-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.