Results 41 - 54 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8986 | 5' | -56.8 | NC_002512.2 | + | 4225 | 0.68 | 0.866312 |
Target: 5'- cGCGGGGAGCgGgacgUCGAGcCCCgacggGUg -3' miRNA: 3'- cCGCUCCUCGgCa---AGUUCaGGGa----CGa -5' |
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8986 | 5' | -56.8 | NC_002512.2 | + | 80650 | 0.66 | 0.946856 |
Target: 5'- cGGCGGcGGcGCCGggUCcgucGGUCCCgcgGCg -3' miRNA: 3'- -CCGCU-CCuCGGCa-AGu---UCAGGGa--CGa -5' |
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8986 | 5' | -56.8 | NC_002512.2 | + | 48701 | 0.66 | 0.942542 |
Target: 5'- gGGCGAGGAccaCgCGUUCGAcUCcuaCCUGCUg -3' miRNA: 3'- -CCGCUCCUc--G-GCAAGUUcAG---GGACGA- -5' |
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8986 | 5' | -56.8 | NC_002512.2 | + | 109047 | 0.66 | 0.938006 |
Target: 5'- aGGgGAGGAaguacgcgucGCCcagCAGGUCCCcGCg -3' miRNA: 3'- -CCgCUCCU----------CGGcaaGUUCAGGGaCGa -5' |
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8986 | 5' | -56.8 | NC_002512.2 | + | 116892 | 0.66 | 0.931777 |
Target: 5'- uGGCGGcGGGGCCGgggCGGgcuccucggacggcGUCCCcgGCUu -3' miRNA: 3'- -CCGCU-CCUCGGCaa-GUU--------------CAGGGa-CGA- -5' |
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8986 | 5' | -56.8 | NC_002512.2 | + | 133878 | 0.67 | 0.917628 |
Target: 5'- cGGCucGAGGAGCgGcUCGgccggcGGUCCCggGCg -3' miRNA: 3'- -CCG--CUCCUCGgCaAGU------UCAGGGa-CGa -5' |
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8986 | 5' | -56.8 | NC_002512.2 | + | 48567 | 0.67 | 0.899999 |
Target: 5'- cGGCGGcuGGAGCUGUaccggagccUgGuGUCCCUGUa -3' miRNA: 3'- -CCGCU--CCUCGGCA---------AgUuCAGGGACGa -5' |
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8986 | 5' | -56.8 | NC_002512.2 | + | 81946 | 0.66 | 0.923059 |
Target: 5'- gGGCgGAGGGGCCGgcgcgcggUGAGcCCCggGCg -3' miRNA: 3'- -CCG-CUCCUCGGCaa------GUUCaGGGa-CGa -5' |
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8986 | 5' | -56.8 | NC_002512.2 | + | 134167 | 0.67 | 0.899999 |
Target: 5'- gGGaCGGGGAGCCGUcuUCcccUCCCgGCc -3' miRNA: 3'- -CC-GCUCCUCGGCA--AGuucAGGGaCGa -5' |
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8986 | 5' | -56.8 | NC_002512.2 | + | 31822 | 0.67 | 0.887154 |
Target: 5'- cGGuCGAGGGGaCGcgCGAgacGUCCCUGUg -3' miRNA: 3'- -CC-GCUCCUCgGCaaGUU---CAGGGACGa -5' |
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8986 | 5' | -56.8 | NC_002512.2 | + | 188394 | 0.68 | 0.880412 |
Target: 5'- uGGCGGGGAGCCucagCGAGguUCCCg--- -3' miRNA: 3'- -CCGCUCCUCGGcaa-GUUC--AGGGacga -5' |
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8986 | 5' | -56.8 | NC_002512.2 | + | 59010 | 0.68 | 0.880412 |
Target: 5'- cGGCGAGGAGCCGcUCAuagagggcGUCgagGCg -3' miRNA: 3'- -CCGCUCCUCGGCaAGUu-------CAGggaCGa -5' |
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8986 | 5' | -56.8 | NC_002512.2 | + | 137224 | 0.68 | 0.87205 |
Target: 5'- cGGCGcGGGcGGCCGUcccggauccgcgCGGGUCCCgGCg -3' miRNA: 3'- -CCGC-UCC-UCGGCAa-----------GUUCAGGGaCGa -5' |
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8986 | 5' | -56.8 | NC_002512.2 | + | 82467 | 0.73 | 0.611721 |
Target: 5'- aGGCGGGGAaggggcccagacGCCGUUUGacgccGGUCCuCUGCa -3' miRNA: 3'- -CCGCUCCU------------CGGCAAGU-----UCAGG-GACGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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