miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 3' -51.8 NC_002512.2 + 85812 0.67 0.994781
Target:  5'- gCGcCUGCUGCc-CGUCucaAGCGUUGCGUg -3'
miRNA:   3'- -GCaGACGACGcuGCAG---UUGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 160932 0.67 0.993976
Target:  5'- aGUC-GCUGCGGCGgugggGGgGUCACGa -3'
miRNA:   3'- gCAGaCGACGCUGCag---UUgUAGUGCg -5'
8987 3' -51.8 NC_002512.2 + 55799 0.67 0.993976
Target:  5'- aGUCUGC-GCGGCuacCGACGUCAuCGg -3'
miRNA:   3'- gCAGACGaCGCUGca-GUUGUAGU-GCg -5'
8987 3' -51.8 NC_002512.2 + 110298 0.67 0.993976
Target:  5'- ----aGCUGCGGCacaucCAgcGCAUCACGCu -3'
miRNA:   3'- gcagaCGACGCUGca---GU--UGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 171462 0.67 0.993976
Target:  5'- aGUCUGCagcgcguccGCGACuUCAACGUCcuagACGUc -3'
miRNA:   3'- gCAGACGa--------CGCUGcAGUUGUAG----UGCG- -5'
8987 3' -51.8 NC_002512.2 + 201190 0.67 0.993976
Target:  5'- uCG-CUGCaccGCuuCGUCAGCucGUCGCGCa -3'
miRNA:   3'- -GCaGACGa--CGcuGCAGUUG--UAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 46725 0.67 0.993976
Target:  5'- aCGUCaugGCggcgGCGGCGgggaAGCG-CGCGCa -3'
miRNA:   3'- -GCAGa--CGa---CGCUGCag--UUGUaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 124642 0.67 0.993075
Target:  5'- cCGggUGC-GCGGCG-CGGCGcUCACGCu -3'
miRNA:   3'- -GCagACGaCGCUGCaGUUGU-AGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 40655 0.67 0.993075
Target:  5'- aCGUCcGCgacgGCGACGgacggaucCGACGUCGaGCa -3'
miRNA:   3'- -GCAGaCGa---CGCUGCa-------GUUGUAGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 212182 0.67 0.993075
Target:  5'- cCGUCcag-GCG-CG-CAACGUCACGCu -3'
miRNA:   3'- -GCAGacgaCGCuGCaGUUGUAGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 118681 0.67 0.993075
Target:  5'- uCGUCUGUccCGACGUCGGCG-C-CGUg -3'
miRNA:   3'- -GCAGACGacGCUGCAGUUGUaGuGCG- -5'
8987 3' -51.8 NC_002512.2 + 155165 0.67 0.993075
Target:  5'- gGUCUcGCUcgcucGCGGCGUCGugagcucggaggACAcCGCGCc -3'
miRNA:   3'- gCAGA-CGA-----CGCUGCAGU------------UGUaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 75613 0.67 0.992069
Target:  5'- gCGUCUGCgcacGCGcACGcgGGCA-CGCGCa -3'
miRNA:   3'- -GCAGACGa---CGC-UGCagUUGUaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 4575 0.67 0.992069
Target:  5'- gCGUCUGggGCGGCGgaggaggCGGCGcCGCGg -3'
miRNA:   3'- -GCAGACgaCGCUGCa------GUUGUaGUGCg -5'
8987 3' -51.8 NC_002512.2 + 37 0.67 0.991412
Target:  5'- gCGUCuUGCaaggggggggggcuuUGCGGCGUCggUcgCGgGCg -3'
miRNA:   3'- -GCAG-ACG---------------ACGCUGCAGuuGuaGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 229441 0.67 0.991412
Target:  5'- gCGUCuUGCaaggggggggggcuuUGCGGCGUCggUcgCGgGCg -3'
miRNA:   3'- -GCAG-ACG---------------ACGCUGCAGuuGuaGUgCG- -5'
8987 3' -51.8 NC_002512.2 + 213723 0.67 0.99095
Target:  5'- aCGUCggaGCUGaCGACGUUGACcgaccggGCGCa -3'
miRNA:   3'- -GCAGa--CGAC-GCUGCAGUUGuag----UGCG- -5'
8987 3' -51.8 NC_002512.2 + 109002 0.67 0.99095
Target:  5'- uCGUCgGCgccgGCGGCGUCGuccugcggacccGCggCGCGUu -3'
miRNA:   3'- -GCAGaCGa---CGCUGCAGU------------UGuaGUGCG- -5'
8987 3' -51.8 NC_002512.2 + 137780 0.67 0.99095
Target:  5'- gGUCUGgaGguCGGCGcUCGGCGggcCGCGCg -3'
miRNA:   3'- gCAGACgaC--GCUGC-AGUUGUa--GUGCG- -5'
8987 3' -51.8 NC_002512.2 + 95975 0.67 0.99095
Target:  5'- gGUUggcGCaGCGGCgGUCGGCGUCcgGCGCc -3'
miRNA:   3'- gCAGa--CGaCGCUG-CAGUUGUAG--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.