Results 41 - 60 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8987 | 5' | -57.8 | NC_002512.2 | + | 91922 | 0.69 | 0.796107 |
Target: 5'- -gGCGCGcCGUCGGCggCCGAcuuggucuuggGCGCGa -3' miRNA: 3'- caCGUGCuGCAGCCGa-GGCU-----------CGUGUg -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 129388 | 0.69 | 0.796107 |
Target: 5'- gGUGCuCGACGaccgCGGCcuccccaaggUCCGGGC-CACg -3' miRNA: 3'- -CACGuGCUGCa---GCCG----------AGGCUCGuGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 82384 | 0.69 | 0.787343 |
Target: 5'- cUGCGgcCGGCGgUGGCUCCGcGCGCGg -3' miRNA: 3'- cACGU--GCUGCaGCCGAGGCuCGUGUg -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 10762 | 0.69 | 0.787343 |
Target: 5'- -aGCGCGuCGUCGGCcccgCCGcGGUAgGCg -3' miRNA: 3'- caCGUGCuGCAGCCGa---GGC-UCGUgUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 123984 | 0.69 | 0.777553 |
Target: 5'- cGUGUACGACGaCGGCgagcccaCCGGGUgggagacggacccGCGCg -3' miRNA: 3'- -CACGUGCUGCaGCCGa------GGCUCG-------------UGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 124264 | 0.69 | 0.751069 |
Target: 5'- gGUGCacccgacgGCGGCGUCGGaC-CCGGGCGUGCg -3' miRNA: 3'- -CACG--------UGCUGCAGCC-GaGGCUCGUGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 116132 | 0.69 | 0.787343 |
Target: 5'- uGUGCAcgccgcguauCGugGUCGGCaacauccCCGAGC-CGCu -3' miRNA: 3'- -CACGU----------GCugCAGCCGa------GGCUCGuGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 134399 | 0.68 | 0.821542 |
Target: 5'- cGUGUggauGCGGCGgCGGUUCCGGGUcUGCg -3' miRNA: 3'- -CACG----UGCUGCaGCCGAGGCUCGuGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 217336 | 0.68 | 0.804733 |
Target: 5'- -aGCACGuACGgCGGCaUCGGGaCGCACg -3' miRNA: 3'- caCGUGC-UGCaGCCGaGGCUC-GUGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 56 | 0.68 | 0.813214 |
Target: 5'- -gGCuuuGCGGCGUCGGUcgCGGGCGCGa -3' miRNA: 3'- caCG---UGCUGCAGCCGagGCUCGUGUg -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 229460 | 0.68 | 0.813214 |
Target: 5'- -gGCuuuGCGGCGUCGGUcgCGGGCGCGa -3' miRNA: 3'- caCG---UGCUGCAGCCGagGCUCGUGUg -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 14531 | 0.68 | 0.813214 |
Target: 5'- -cGCGCGACGgagucgaCGGagCCGGGCACGa -3' miRNA: 3'- caCGUGCUGCa------GCCgaGGCUCGUGUg -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 101603 | 0.68 | 0.821542 |
Target: 5'- cGUGCggGCGGcCGUCGGC-CCG-GCGC-Cg -3' miRNA: 3'- -CACG--UGCU-GCAGCCGaGGCuCGUGuG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 115673 | 0.68 | 0.837711 |
Target: 5'- cUGCACGugGgcUCGGg-CCGGGCcuacaGCACg -3' miRNA: 3'- cACGUGCugC--AGCCgaGGCUCG-----UGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 152 | 0.68 | 0.837711 |
Target: 5'- -gGCGgGGCGcCGGCggagGAGCGCGCg -3' miRNA: 3'- caCGUgCUGCaGCCGagg-CUCGUGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 159135 | 0.68 | 0.82971 |
Target: 5'- -aGCGCGGCcgcuccaaGUgaGGCggCCGGGCGCGCu -3' miRNA: 3'- caCGUGCUG--------CAg-CCGa-GGCUCGUGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 119933 | 0.68 | 0.82971 |
Target: 5'- -aGCGCGGCGUC-GC-CCccGCACGCg -3' miRNA: 3'- caCGUGCUGCAGcCGaGGcuCGUGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 143747 | 0.68 | 0.813214 |
Target: 5'- -gGcCGCGGCGUCGGCUuCCaGGUcCGCg -3' miRNA: 3'- caC-GUGCUGCAGCCGA-GGcUCGuGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 185168 | 0.68 | 0.812372 |
Target: 5'- -gGCGCGGCGUCcaGGacuucuuCUCCGAGaACGCg -3' miRNA: 3'- caCGUGCUGCAG--CC-------GAGGCUCgUGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 222750 | 0.68 | 0.804733 |
Target: 5'- cUGCugGACGUCucccucgucugGGCcaaCGAGCACGg -3' miRNA: 3'- cACGugCUGCAG-----------CCGag-GCUCGUGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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