miRNA display CGI


Results 81 - 100 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 123650 0.67 0.853186
Target:  5'- -aGCGCGcCG-CGGUUCCcGcGCGCGCg -3'
miRNA:   3'- caCGUGCuGCaGCCGAGG-CuCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 5094 0.67 0.881859
Target:  5'- -cGC-CGGCGUCGGCg-CGGGCGgGa -3'
miRNA:   3'- caCGuGCUGCAGCCGagGCUCGUgUg -5'
8987 5' -57.8 NC_002512.2 + 58965 0.67 0.881859
Target:  5'- -cGCGCGGCagcaUCGGCUCgaAGCGCAg -3'
miRNA:   3'- caCGUGCUGc---AGCCGAGgcUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 54825 0.67 0.881859
Target:  5'- uGUGCACGuCGcacccgCGGaaccggCCGAGCGCGa -3'
miRNA:   3'- -CACGUGCuGCa-----GCCga----GGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 137320 0.67 0.87429
Target:  5'- -gGcCGCGGCGUCGGCgccUCCGAcgucgucGC-CGCg -3'
miRNA:   3'- caC-GUGCUGCAGCCG---AGGCU-------CGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 137186 0.67 0.867916
Target:  5'- -cGUACGGCGUCGucGgUCCGcccggugggcGGCGCGCc -3'
miRNA:   3'- caCGUGCUGCAGC--CgAGGC----------UCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 91853 0.67 0.867916
Target:  5'- -cGCAgGAUGUCGGCUCgGAagucggauccGUACGu -3'
miRNA:   3'- caCGUgCUGCAGCCGAGgCU----------CGUGUg -5'
8987 5' -57.8 NC_002512.2 + 48511 0.67 0.867916
Target:  5'- -cGCACGACGacgcgCGGCUgCUGaAGCugAUc -3'
miRNA:   3'- caCGUGCUGCa----GCCGA-GGC-UCGugUG- -5'
8987 5' -57.8 NC_002512.2 + 226596 0.67 0.867916
Target:  5'- -gGCAuCGugGgCGGCUCUGGGCGa-- -3'
miRNA:   3'- caCGU-GCugCaGCCGAGGCUCGUgug -5'
8987 5' -57.8 NC_002512.2 + 23266 0.67 0.860647
Target:  5'- --uCACGACGUacgCGGCcuggUUCGAGUGCACg -3'
miRNA:   3'- cacGUGCUGCA---GCCG----AGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 133929 0.67 0.845538
Target:  5'- cUGUACGGCGgCGGC-CCGAcgGCcCGCg -3'
miRNA:   3'- cACGUGCUGCaGCCGaGGCU--CGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 54265 0.67 0.845538
Target:  5'- -gGCgGCGGCGUCGGCgacCCuGGCACc- -3'
miRNA:   3'- caCG-UGCUGCAGCCGa--GGcUCGUGug -5'
8987 5' -57.8 NC_002512.2 + 9222 0.66 0.91305
Target:  5'- -aGCACGACG-CGGCgggCCagguGGCGCucGCg -3'
miRNA:   3'- caCGUGCUGCaGCCGa--GGc---UCGUG--UG- -5'
8987 5' -57.8 NC_002512.2 + 84694 0.66 0.91305
Target:  5'- -aGCcCGGgGUCGaaCUCCGuGCGCGCg -3'
miRNA:   3'- caCGuGCUgCAGCc-GAGGCuCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 74701 0.66 0.901219
Target:  5'- -gGCGCGGUGUC--CUCCGAGCuCACg -3'
miRNA:   3'- caCGUGCUGCAGccGAGGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 53745 0.66 0.91305
Target:  5'- cUGCGCGACGUCcGCggaUCGAG-AUACg -3'
miRNA:   3'- cACGUGCUGCAGcCGa--GGCUCgUGUG- -5'
8987 5' -57.8 NC_002512.2 + 47449 0.66 0.918636
Target:  5'- -cGCACGGCGgaGGCcgaggCCGAGUucCGCa -3'
miRNA:   3'- caCGUGCUGCagCCGa----GGCUCGu-GUG- -5'
8987 5' -57.8 NC_002512.2 + 60103 0.66 0.918636
Target:  5'- -gGCACGACGaCGGUgugccugcucUgCGAGCugAUg -3'
miRNA:   3'- caCGUGCUGCaGCCG----------AgGCUCGugUG- -5'
8987 5' -57.8 NC_002512.2 + 170377 0.66 0.918636
Target:  5'- cGUGCGCGGCGcCGcGCugcacuUCUG-GCACAg -3'
miRNA:   3'- -CACGUGCUGCaGC-CG------AGGCuCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 182291 0.66 0.894978
Target:  5'- -cGUugGAUGUCGGUcaCCGcGUACAUa -3'
miRNA:   3'- caCGugCUGCAGCCGa-GGCuCGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.