miRNA display CGI


Results 81 - 100 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 146439 0.72 0.585793
Target:  5'- -cGCACGACuUCG--UCCGGGCGCACu -3'
miRNA:   3'- caCGUGCUGcAGCcgAGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 146957 0.66 0.91305
Target:  5'- -aGCGCGACGaCGGCggccgcggCCGAGacuucCGCu -3'
miRNA:   3'- caCGUGCUGCaGCCGa-------GGCUCgu---GUG- -5'
8987 5' -57.8 NC_002512.2 + 152336 0.66 0.901219
Target:  5'- gGUGguCAUGACGacaccgCGGacCUCCGAGCACGg -3'
miRNA:   3'- -CAC--GUGCUGCa-----GCC--GAGGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 152459 0.66 0.888524
Target:  5'- -cGCGCGGCGUUgggaGGCgucCCGGGUccugugACGCg -3'
miRNA:   3'- caCGUGCUGCAG----CCGa--GGCUCG------UGUG- -5'
8987 5' -57.8 NC_002512.2 + 154678 0.67 0.860647
Target:  5'- -cGgGCGAcCGUCcGCUCCGAGCGg-- -3'
miRNA:   3'- caCgUGCU-GCAGcCGAGGCUCGUgug -5'
8987 5' -57.8 NC_002512.2 + 154718 0.66 0.91305
Target:  5'- -gGCGCGACGgaaCGGCguugcgUCCGcGGC-CGCg -3'
miRNA:   3'- caCGUGCUGCa--GCCG------AGGC-UCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 155174 0.69 0.778449
Target:  5'- -cGCucGCGGCGUCGugaGCUCgGAGgACACc -3'
miRNA:   3'- caCG--UGCUGCAGC---CGAGgCUCgUGUG- -5'
8987 5' -57.8 NC_002512.2 + 155267 0.66 0.91305
Target:  5'- -cGCGCGGCGgucUCGcGCUCCGcuccGGUcCGCg -3'
miRNA:   3'- caCGUGCUGC---AGC-CGAGGC----UCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 156200 0.67 0.853186
Target:  5'- aUGgACGuCGUCaGCgCCGAGCugGCc -3'
miRNA:   3'- cACgUGCuGCAGcCGaGGCUCGugUG- -5'
8987 5' -57.8 NC_002512.2 + 156477 0.66 0.907244
Target:  5'- -gGgGCGGCGggcUCGGCgggCUGGGCGgACa -3'
miRNA:   3'- caCgUGCUGC---AGCCGa--GGCUCGUgUG- -5'
8987 5' -57.8 NC_002512.2 + 156531 0.73 0.556583
Target:  5'- uGUGUuccuGCGACGcCGGUUCgGAGCGCGu -3'
miRNA:   3'- -CACG----UGCUGCaGCCGAGgCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 156969 0.7 0.722815
Target:  5'- -cGC-CGACGUCGGCaUCCuGGGCAa-- -3'
miRNA:   3'- caCGuGCUGCAGCCG-AGG-CUCGUgug -5'
8987 5' -57.8 NC_002512.2 + 158242 0.66 0.907244
Target:  5'- -aGUuCGGC-UCGGUggCCGAGUACACc -3'
miRNA:   3'- caCGuGCUGcAGCCGa-GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 159135 0.68 0.82971
Target:  5'- -aGCGCGGCcgcuccaaGUgaGGCggCCGGGCGCGCu -3'
miRNA:   3'- caCGUGCUG--------CAg-CCGa-GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 160748 0.7 0.741737
Target:  5'- ---aACGGCGcCGGCcCCGGGCACGg -3'
miRNA:   3'- cacgUGCUGCaGCCGaGGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 167121 0.66 0.91305
Target:  5'- cUGCaACGACGUCgaguuccuGGuCUCCGAGguCGg -3'
miRNA:   3'- cACG-UGCUGCAG--------CC-GAGGCUCguGUg -5'
8987 5' -57.8 NC_002512.2 + 168409 0.7 0.707465
Target:  5'- gGUGCGCGAUGUCGauGCUcacccgguacaggucCCGGGC-CACc -3'
miRNA:   3'- -CACGUGCUGCAGC--CGA---------------GGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 169005 0.71 0.684166
Target:  5'- -cGCGCGcCGgcUCGGCgaUCCGGGCGgGCg -3'
miRNA:   3'- caCGUGCuGC--AGCCG--AGGCUCGUgUG- -5'
8987 5' -57.8 NC_002512.2 + 170377 0.66 0.918636
Target:  5'- cGUGCGCGGCGcCGcGCugcacuUCUG-GCACAg -3'
miRNA:   3'- -CACGUGCUGCaGC-CG------AGGCuCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 176913 0.67 0.867198
Target:  5'- -cGCuCGaACGUCucguucaGGCUCCG-GCGCGCc -3'
miRNA:   3'- caCGuGC-UGCAG-------CCGAGGCuCGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.