miRNA display CGI


Results 101 - 120 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 181384 0.66 0.885883
Target:  5'- -cGCGCGuCGUCGuGCgcccuggccuccgCCGGGgACGCg -3'
miRNA:   3'- caCGUGCuGCAGC-CGa------------GGCUCgUGUG- -5'
8987 5' -57.8 NC_002512.2 + 182047 0.69 0.796107
Target:  5'- gGUGCAgGAUGUCGGCcagCCGcgccgaccucAGC-CGCg -3'
miRNA:   3'- -CACGUgCUGCAGCCGa--GGC----------UCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 182291 0.66 0.894978
Target:  5'- -cGUugGAUGUCGGUcaCCGcGUACAUa -3'
miRNA:   3'- caCGugCUGCAGCCGa-GGCuCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 185168 0.68 0.812372
Target:  5'- -gGCGCGGCGUCcaGGacuucuuCUCCGAGaACGCg -3'
miRNA:   3'- caCGUGCUGCAG--CC-------GAGGCUCgUGUG- -5'
8987 5' -57.8 NC_002512.2 + 188851 0.66 0.894978
Target:  5'- -aGCgACGA-GUCGGUcaccUUCGAGUACACc -3'
miRNA:   3'- caCG-UGCUgCAGCCG----AGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 189563 0.67 0.881859
Target:  5'- -gGUGCGACGUCuGCUuccgaCCGGGC-CGCc -3'
miRNA:   3'- caCGUGCUGCAGcCGA-----GGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 190274 1.08 0.003601
Target:  5'- gGUGCACGACGUCGGCUCCGAGCACACc -3'
miRNA:   3'- -CACGUGCUGCAGCCGAGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 194406 0.69 0.751069
Target:  5'- -gGC-CGACGUCGuCUUCGAGUACGa -3'
miRNA:   3'- caCGuGCUGCAGCcGAGGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 199617 0.67 0.874989
Target:  5'- --cCAUGGCGcCGGCUCCGcGCGucCGCg -3'
miRNA:   3'- cacGUGCUGCaGCCGAGGCuCGU--GUG- -5'
8987 5' -57.8 NC_002512.2 + 203207 0.69 0.778449
Target:  5'- -aGCACGGCGUaCGucugccGCUUCGAGCcCGCc -3'
miRNA:   3'- caCGUGCUGCA-GC------CGAGGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 206274 0.66 0.907244
Target:  5'- cUGCACGuCGUaCGGC---GAGUACACg -3'
miRNA:   3'- cACGUGCuGCA-GCCGaggCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 209158 0.69 0.787343
Target:  5'- -aGCACGucguCGUCGGCa-CG-GCGCGCa -3'
miRNA:   3'- caCGUGCu---GCAGCCGagGCuCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 211298 0.72 0.615281
Target:  5'- -aGUGCGGCaugCGGCggUCCGAGCGCAUc -3'
miRNA:   3'- caCGUGCUGca-GCCG--AGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 211688 0.73 0.537342
Target:  5'- cGUGCGCGACGUgaugCGGCacgagGAGCGCGCc -3'
miRNA:   3'- -CACGUGCUGCA----GCCGagg--CUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 211732 0.7 0.692936
Target:  5'- uGUGCcucggccuggcccGCGACG-CGGC-CCGGGCGCuGCg -3'
miRNA:   3'- -CACG-------------UGCUGCaGCCGaGGCUCGUG-UG- -5'
8987 5' -57.8 NC_002512.2 + 215142 0.67 0.874989
Target:  5'- -cGCGCGACGggggaGGCgaCGAGCACc- -3'
miRNA:   3'- caCGUGCUGCag---CCGagGCUCGUGug -5'
8987 5' -57.8 NC_002512.2 + 215350 0.67 0.881859
Target:  5'- cGUGCcCGGCuccGUCGaCUCCGucGCGCGCu -3'
miRNA:   3'- -CACGuGCUG---CAGCcGAGGCu-CGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 217336 0.68 0.804733
Target:  5'- -aGCACGuACGgCGGCaUCGGGaCGCACg -3'
miRNA:   3'- caCGUGC-UGCaGCCGaGGCUC-GUGUG- -5'
8987 5' -57.8 NC_002512.2 + 218650 0.66 0.888524
Target:  5'- -cGCcCGGCGgacggaGGCggauacCCGGGCACACc -3'
miRNA:   3'- caCGuGCUGCag----CCGa-----GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 222750 0.68 0.804733
Target:  5'- cUGCugGACGUCucccucgucugGGCcaaCGAGCACGg -3'
miRNA:   3'- cACGugCUGCAG-----------CCGag-GCUCGUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.