miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 152336 0.66 0.901219
Target:  5'- gGUGguCAUGACGacaccgCGGacCUCCGAGCACGg -3'
miRNA:   3'- -CAC--GUGCUGCa-----GCC--GAGGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 146957 0.66 0.91305
Target:  5'- -aGCGCGACGaCGGCggccgcggCCGAGacuucCGCu -3'
miRNA:   3'- caCGUGCUGCaGCCGa-------GGCUCgu---GUG- -5'
8987 5' -57.8 NC_002512.2 + 146439 0.72 0.585793
Target:  5'- -cGCACGACuUCG--UCCGGGCGCACu -3'
miRNA:   3'- caCGUGCUGcAGCcgAGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 143747 0.68 0.813214
Target:  5'- -gGcCGCGGCGUCGGCUuCCaGGUcCGCg -3'
miRNA:   3'- caC-GUGCUGCAGCCGA-GGcUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 140886 0.66 0.886546
Target:  5'- cUGCcCGACGUCcccgcGCUCCGGGUcgacgacggggacgACGCg -3'
miRNA:   3'- cACGuGCUGCAGc----CGAGGCUCG--------------UGUG- -5'
8987 5' -57.8 NC_002512.2 + 138367 0.72 0.605431
Target:  5'- --cCAgGACcagCGGCUCCGAGUGCACg -3'
miRNA:   3'- cacGUgCUGca-GCCGAGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 137320 0.67 0.87429
Target:  5'- -gGcCGCGGCGUCGGCgccUCCGAcgucgucGC-CGCg -3'
miRNA:   3'- caC-GUGCUGCAGCCG---AGGCU-------CGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 137186 0.67 0.867916
Target:  5'- -cGUACGGCGUCGucGgUCCGcccggugggcGGCGCGCc -3'
miRNA:   3'- caCGUGCUGCAGC--CgAGGC----------UCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 137141 0.73 0.576017
Target:  5'- -cGCcCGuCGUCGGCgccaucggaCCGAGCGCGCc -3'
miRNA:   3'- caCGuGCuGCAGCCGa--------GGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 136203 0.66 0.894978
Target:  5'- -cGCGuCGACGcCGGCggCCuGGUGCGCg -3'
miRNA:   3'- caCGU-GCUGCaGCCGa-GGcUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 134399 0.68 0.821542
Target:  5'- cGUGUggauGCGGCGgCGGUUCCGGGUcUGCg -3'
miRNA:   3'- -CACG----UGCUGCaGCCGAGGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 133929 0.67 0.845538
Target:  5'- cUGUACGGCGgCGGC-CCGAcgGCcCGCg -3'
miRNA:   3'- cACGUGCUGCaGCCGaGGCU--CGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 132747 0.66 0.907244
Target:  5'- -aGCGCGGCGUCGuC-CCGcaGGCGgGCg -3'
miRNA:   3'- caCGUGCUGCAGCcGaGGC--UCGUgUG- -5'
8987 5' -57.8 NC_002512.2 + 132445 0.66 0.888524
Target:  5'- uUGCGCuccccGGCGgCGGgUCCGgggAGCGCGCg -3'
miRNA:   3'- cACGUG-----CUGCaGCCgAGGC---UCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 130770 0.68 0.821542
Target:  5'- cGUGCGCGAucucuUGgagCGGC-CCGGGCuCGCc -3'
miRNA:   3'- -CACGUGCU-----GCa--GCCGaGGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 129388 0.69 0.796107
Target:  5'- gGUGCuCGACGaccgCGGCcuccccaaggUCCGGGC-CACg -3'
miRNA:   3'- -CACGuGCUGCa---GCCG----------AGGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 127002 0.71 0.674383
Target:  5'- -cGCACGGuggaGUCGG-UCCGGGCGCGu -3'
miRNA:   3'- caCGUGCUg---CAGCCgAGGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 126016 0.7 0.71324
Target:  5'- uUGCACGcguuCGUCaggcccaGCUCCGGGUGCACc -3'
miRNA:   3'- cACGUGCu---GCAGc------CGAGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 124682 0.67 0.874989
Target:  5'- -aGaCGgGACcUCGGgaUCCGGGCGCACg -3'
miRNA:   3'- caC-GUgCUGcAGCCg-AGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 124618 0.76 0.401947
Target:  5'- -cGUcgGCGGCGUCGGCgccuggaUCCGGGUGCGCg -3'
miRNA:   3'- caCG--UGCUGCAGCCG-------AGGCUCGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.