Results 81 - 100 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8987 | 5' | -57.8 | NC_002512.2 | + | 91922 | 0.69 | 0.796107 |
Target: 5'- -gGCGCGcCGUCGGCggCCGAcuuggucuuggGCGCGa -3' miRNA: 3'- caCGUGCuGCAGCCGa-GGCU-----------CGUGUg -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 91896 | 0.7 | 0.741737 |
Target: 5'- -gGCGCGGCGcaCGGC-CCGcucgggcccGGCACGCa -3' miRNA: 3'- caCGUGCUGCa-GCCGaGGC---------UCGUGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 91853 | 0.67 | 0.867916 |
Target: 5'- -cGCAgGAUGUCGGCUCgGAagucggauccGUACGu -3' miRNA: 3'- caCGUgCUGCAGCCGAGgCU----------CGUGUg -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 91673 | 0.68 | 0.808143 |
Target: 5'- -cGCGCGGacgucCGUCGGCcccgacgguaggaugUCCGcgauGCACACg -3' miRNA: 3'- caCGUGCU-----GCAGCCG---------------AGGCu---CGUGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 89414 | 0.67 | 0.858428 |
Target: 5'- -cGCGCGgaaccaggccucggGCGUCGGCggggucacgUCCGGGCcCAUg -3' miRNA: 3'- caCGUGC--------------UGCAGCCG---------AGGCUCGuGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 89004 | 0.66 | 0.918636 |
Target: 5'- -aGCGCgggGACGUCGGgcagcgcgaUCCGAGCGaacucCACg -3' miRNA: 3'- caCGUG---CUGCAGCCg--------AGGCUCGU-----GUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 84694 | 0.66 | 0.91305 |
Target: 5'- -aGCcCGGgGUCGaaCUCCGuGCGCGCg -3' miRNA: 3'- caCGuGCUgCAGCc-GAGGCuCGUGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 83815 | 0.73 | 0.553683 |
Target: 5'- -cGCGcCGGCGgcggCGGCUCCGGGCccgggucgucgcagGCGCu -3' miRNA: 3'- caCGU-GCUGCa---GCCGAGGCUCG--------------UGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 82384 | 0.69 | 0.787343 |
Target: 5'- cUGCGgcCGGCGgUGGCUCCGcGCGCGg -3' miRNA: 3'- cACGU--GCUGCaGCCGAGGCuCGUGUg -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 75737 | 0.67 | 0.881859 |
Target: 5'- -cGC-CGaACGggaGGCgaCCGAGCGCGCg -3' miRNA: 3'- caCGuGC-UGCag-CCGa-GGCUCGUGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 74701 | 0.66 | 0.901219 |
Target: 5'- -gGCGCGGUGUC--CUCCGAGCuCACg -3' miRNA: 3'- caCGUGCUGCAGccGAGGCUCGuGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 74587 | 0.66 | 0.918087 |
Target: 5'- gGUGCuCGAggccggggcccucCGUCGGCUC-GAGC-CGCc -3' miRNA: 3'- -CACGuGCU-------------GCAGCCGAGgCUCGuGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 73089 | 0.7 | 0.740799 |
Target: 5'- aGUGCACGACGUgcugguacaCGGCguggucgCCcgagacgcccgucGAGUACACg -3' miRNA: 3'- -CACGUGCUGCA---------GCCGa------GG-------------CUCGUGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 72981 | 0.66 | 0.91305 |
Target: 5'- cGUGCACGACGUguguacccaacaCGacCUCCugcgucugGAGUACACg -3' miRNA: 3'- -CACGUGCUGCA------------GCc-GAGG--------CUCGUGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 72926 | 0.77 | 0.355212 |
Target: 5'- aUGC-CGACGUCGGCgaacggCCGGGC-CACc -3' miRNA: 3'- cACGuGCUGCAGCCGa-----GGCUCGuGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 60982 | 0.66 | 0.894978 |
Target: 5'- cUGCACGACGUC--UUCCGcgAGCACcCg -3' miRNA: 3'- cACGUGCUGCAGccGAGGC--UCGUGuG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 60103 | 0.66 | 0.918636 |
Target: 5'- -gGCACGACGaCGGUgugccugcucUgCGAGCugAUg -3' miRNA: 3'- caCGUGCUGCaGCCG----------AgGCUCGugUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 58965 | 0.67 | 0.881859 |
Target: 5'- -cGCGCGGCagcaUCGGCUCgaAGCGCAg -3' miRNA: 3'- caCGUGCUGc---AGCCGAGgcUCGUGUg -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 54825 | 0.67 | 0.881859 |
Target: 5'- uGUGCACGuCGcacccgCGGaaccggCCGAGCGCGa -3' miRNA: 3'- -CACGUGCuGCa-----GCCga----GGCUCGUGUg -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 54265 | 0.67 | 0.845538 |
Target: 5'- -gGCgGCGGCGUCGGCgacCCuGGCACc- -3' miRNA: 3'- caCG-UGCUGCAGCCGa--GGcUCGUGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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