miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8987 5' -57.8 NC_002512.2 + 83815 0.73 0.553683
Target:  5'- -cGCGcCGGCGgcggCGGCUCCGGGCccgggucgucgcagGCGCu -3'
miRNA:   3'- caCGU-GCUGCa---GCCGAGGCUCG--------------UGUG- -5'
8987 5' -57.8 NC_002512.2 + 117396 0.76 0.414436
Target:  5'- cGUGCACGgcaucgaggaccaggGCGUCauccGCUCCGAGCGCGa -3'
miRNA:   3'- -CACGUGC---------------UGCAGc---CGAGGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 124618 0.76 0.401947
Target:  5'- -cGUcgGCGGCGUCGGCgccuggaUCCGGGUGCGCg -3'
miRNA:   3'- caCG--UGCUGCAGCCG-------AGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 11019 0.76 0.370618
Target:  5'- -cGCACGGCGUCGGUgccCCGGGCGa-- -3'
miRNA:   3'- caCGUGCUGCAGCCGa--GGCUCGUgug -5'
8987 5' -57.8 NC_002512.2 + 72926 0.77 0.355212
Target:  5'- aUGC-CGACGUCGGCgaacggCCGGGC-CACc -3'
miRNA:   3'- cACGuGCUGCAGCCGa-----GGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 126016 0.7 0.71324
Target:  5'- uUGCACGcguuCGUCaggcccaGCUCCGGGUGCACc -3'
miRNA:   3'- cACGUGCu---GCAGc------CGAGGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 33257 0.7 0.71324
Target:  5'- --aCACGGCGUCGGCcacCCGGGCGaACc -3'
miRNA:   3'- cacGUGCUGCAGCCGa--GGCUCGUgUG- -5'
8987 5' -57.8 NC_002512.2 + 229460 0.68 0.813214
Target:  5'- -gGCuuuGCGGCGUCGGUcgCGGGCGCGa -3'
miRNA:   3'- caCG---UGCUGCAGCCGagGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 56 0.68 0.813214
Target:  5'- -gGCuuuGCGGCGUCGGUcgCGGGCGCGa -3'
miRNA:   3'- caCG---UGCUGCAGCCGagGCUCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 91673 0.68 0.808143
Target:  5'- -cGCGCGGacgucCGUCGGCcccgacgguaggaugUCCGcgauGCACACg -3'
miRNA:   3'- caCGUGCU-----GCAGCCG---------------AGGCu---CGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 26592 0.68 0.804733
Target:  5'- cGUGCACGGC--CGGCUUCGc-CACGCu -3'
miRNA:   3'- -CACGUGCUGcaGCCGAGGCucGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 91922 0.69 0.796107
Target:  5'- -gGCGCGcCGUCGGCggCCGAcuuggucuuggGCGCGa -3'
miRNA:   3'- caCGUGCuGCAGCCGa-GGCU-----------CGUGUg -5'
8987 5' -57.8 NC_002512.2 + 129388 0.69 0.796107
Target:  5'- gGUGCuCGACGaccgCGGCcuccccaaggUCCGGGC-CACg -3'
miRNA:   3'- -CACGuGCUGCa---GCCG----------AGGCUCGuGUG- -5'
8987 5' -57.8 NC_002512.2 + 82384 0.69 0.787343
Target:  5'- cUGCGgcCGGCGgUGGCUCCGcGCGCGg -3'
miRNA:   3'- cACGU--GCUGCaGCCGAGGCuCGUGUg -5'
8987 5' -57.8 NC_002512.2 + 10762 0.69 0.787343
Target:  5'- -aGCGCGuCGUCGGCcccgCCGcGGUAgGCg -3'
miRNA:   3'- caCGUGCuGCAGCCGa---GGC-UCGUgUG- -5'
8987 5' -57.8 NC_002512.2 + 123984 0.69 0.777553
Target:  5'- cGUGUACGACGaCGGCgagcccaCCGGGUgggagacggacccGCGCg -3'
miRNA:   3'- -CACGUGCUGCaGCCGa------GGCUCG-------------UGUG- -5'
8987 5' -57.8 NC_002512.2 + 26730 0.69 0.769433
Target:  5'- uGUGCGCGuCGcCGGCgCCGcuGUACGCc -3'
miRNA:   3'- -CACGUGCuGCaGCCGaGGCu-CGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 50018 0.69 0.751069
Target:  5'- gGUGCACGuCGUCGuGaCggUGGGCGCGCa -3'
miRNA:   3'- -CACGUGCuGCAGC-C-GagGCUCGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 116116 0.7 0.741737
Target:  5'- cGUGCcCGagaucgacgacuGCGUCGGCUCCauGAccGCGCACc -3'
miRNA:   3'- -CACGuGC------------UGCAGCCGAGG--CU--CGUGUG- -5'
8987 5' -57.8 NC_002512.2 + 73089 0.7 0.740799
Target:  5'- aGUGCACGACGUgcugguacaCGGCguggucgCCcgagacgcccgucGAGUACACg -3'
miRNA:   3'- -CACGUGCUGCA---------GCCGa------GG-------------CUCGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.