Results 81 - 100 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8987 | 5' | -57.8 | NC_002512.2 | + | 140886 | 0.66 | 0.886546 |
Target: 5'- cUGCcCGACGUCcccgcGCUCCGGGUcgacgacggggacgACGCg -3' miRNA: 3'- cACGuGCUGCAGc----CGAGGCUCG--------------UGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 5094 | 0.67 | 0.881859 |
Target: 5'- -cGC-CGGCGUCGGCg-CGGGCGgGa -3' miRNA: 3'- caCGuGCUGCAGCCGagGCUCGUgUg -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 54825 | 0.67 | 0.881859 |
Target: 5'- uGUGCACGuCGcacccgCGGaaccggCCGAGCGCGa -3' miRNA: 3'- -CACGUGCuGCa-----GCCga----GGCUCGUGUg -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 137320 | 0.67 | 0.87429 |
Target: 5'- -gGcCGCGGCGUCGGCgccUCCGAcgucgucGC-CGCg -3' miRNA: 3'- caC-GUGCUGCAGCCG---AGGCU-------CGuGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 137186 | 0.67 | 0.867916 |
Target: 5'- -cGUACGGCGUCGucGgUCCGcccggugggcGGCGCGCc -3' miRNA: 3'- caCGUGCUGCAGC--CgAGGC----------UCGUGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 91853 | 0.67 | 0.867916 |
Target: 5'- -cGCAgGAUGUCGGCUCgGAagucggauccGUACGu -3' miRNA: 3'- caCGUgCUGCAGCCGAGgCU----------CGUGUg -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 48511 | 0.67 | 0.867916 |
Target: 5'- -cGCACGACGacgcgCGGCUgCUGaAGCugAUc -3' miRNA: 3'- caCGUGCUGCa----GCCGA-GGC-UCGugUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 41253 | 0.66 | 0.901219 |
Target: 5'- -cGC-CGGCGcccuugCGGC-CCGAGCGCuCg -3' miRNA: 3'- caCGuGCUGCa-----GCCGaGGCUCGUGuG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 74701 | 0.66 | 0.901219 |
Target: 5'- -gGCGCGGUGUC--CUCCGAGCuCACg -3' miRNA: 3'- caCGUGCUGCAGccGAGGCUCGuGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 91673 | 0.68 | 0.808143 |
Target: 5'- -cGCGCGGacgucCGUCGGCcccgacgguaggaugUCCGcgauGCACACg -3' miRNA: 3'- caCGUGCU-----GCAGCCG---------------AGGCu---CGUGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 56 | 0.68 | 0.813214 |
Target: 5'- -gGCuuuGCGGCGUCGGUcgCGGGCGCGa -3' miRNA: 3'- caCG---UGCUGCAGCCGagGCUCGUGUg -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 229460 | 0.68 | 0.813214 |
Target: 5'- -gGCuuuGCGGCGUCGGUcgCGGGCGCGa -3' miRNA: 3'- caCG---UGCUGCAGCCGagGCUCGUGUg -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 14531 | 0.68 | 0.813214 |
Target: 5'- -cGCGCGACGgagucgaCGGagCCGGGCACGa -3' miRNA: 3'- caCGUGCUGCa------GCCgaGGCUCGUGUg -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 134399 | 0.68 | 0.821542 |
Target: 5'- cGUGUggauGCGGCGgCGGUUCCGGGUcUGCg -3' miRNA: 3'- -CACG----UGCUGCaGCCGAGGCUCGuGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 3504 | 0.66 | 0.888524 |
Target: 5'- -gGCGcCGuCGUCGGCccuccacCCGAGCcCGCg -3' miRNA: 3'- caCGU-GCuGCAGCCGa------GGCUCGuGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 60103 | 0.66 | 0.918636 |
Target: 5'- -gGCACGACGaCGGUgugccugcucUgCGAGCugAUg -3' miRNA: 3'- caCGUGCUGCaGCCG----------AgGCUCGugUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 47449 | 0.66 | 0.918636 |
Target: 5'- -cGCACGGCGgaGGCcgaggCCGAGUucCGCa -3' miRNA: 3'- caCGUGCUGCagCCGa----GGCUCGu-GUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 53745 | 0.66 | 0.91305 |
Target: 5'- cUGCGCGACGUCcGCggaUCGAG-AUACg -3' miRNA: 3'- cACGUGCUGCAGcCGa--GGCUCgUGUG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 9222 | 0.66 | 0.91305 |
Target: 5'- -aGCACGACG-CGGCgggCCagguGGCGCucGCg -3' miRNA: 3'- caCGUGCUGCaGCCGa--GGc---UCGUG--UG- -5' |
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8987 | 5' | -57.8 | NC_002512.2 | + | 84694 | 0.66 | 0.91305 |
Target: 5'- -aGCcCGGgGUCGaaCUCCGuGCGCGCg -3' miRNA: 3'- caCGuGCUgCAGCc-GAGGCuCGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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