miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 167728 0.67 0.867123
Target:  5'- cUCUCGUCgaGCgGGGCGAGgagcugccggGCGUCgGc -3'
miRNA:   3'- cAGAGCAGggCG-CCCGCUU----------UGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 133392 0.67 0.880849
Target:  5'- --aUCGgugCCCGUGGGCGAcgccauGGCGcCCc -3'
miRNA:   3'- cagAGCa--GGGCGCCCGCU------UUGCaGGc -5'
8988 5' -58.3 NC_002512.2 + 211552 0.67 0.893784
Target:  5'- uUCggcgUGUgCCGCGGgauguccccauGCGggGCGUCCc -3'
miRNA:   3'- cAGa---GCAgGGCGCC-----------CGCuuUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 219038 0.67 0.893784
Target:  5'- gGUCUaCGUCgucggCCGCGGcGCGggGC-UCCc -3'
miRNA:   3'- -CAGA-GCAG-----GGCGCC-CGCuuUGcAGGc -5'
8988 5' -58.3 NC_002512.2 + 178668 0.67 0.874083
Target:  5'- aUCgUCGUCCa--GGuGCGAcACGUCCGa -3'
miRNA:   3'- cAG-AGCAGGgcgCC-CGCUuUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 207679 0.67 0.859975
Target:  5'- -gCUC-UCCCGCcGGcCGAAGCGcUCCGu -3'
miRNA:   3'- caGAGcAGGGCGcCC-GCUUUGC-AGGC- -5'
8988 5' -58.3 NC_002512.2 + 204211 0.67 0.859975
Target:  5'- -cCUgCGUUCCGaCGaGGCGcAGCGUCUGg -3'
miRNA:   3'- caGA-GCAGGGC-GC-CCGCuUUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 113133 0.67 0.874083
Target:  5'- -cCUCGgagaCCGCGcGCGggGCG-CCGg -3'
miRNA:   3'- caGAGCag--GGCGCcCGCuuUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 9673 0.67 0.887417
Target:  5'- -aCUCGUCCCcCGGGCcgc-CGUCgGg -3'
miRNA:   3'- caGAGCAGGGcGCCCGcuuuGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 106663 0.68 0.852643
Target:  5'- --gUCGagCCCGCacuGGGCGGcGACGUCCu -3'
miRNA:   3'- cagAGCa-GGGCG---CCCGCU-UUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 6697 0.68 0.829597
Target:  5'- ---cCGUcCCCGuCGGGCGGccCGUCCa -3'
miRNA:   3'- cagaGCA-GGGC-GCCCGCUuuGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 83190 0.68 0.842844
Target:  5'- cGUCUcCGUCgCCcguccgcgcgcgggGCGGGgGGAGCGUCgGu -3'
miRNA:   3'- -CAGA-GCAG-GG--------------CGCCCgCUUUGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 75537 0.68 0.821586
Target:  5'- aUCUUGUCCCaaaaaaauccGCGGGCucgccGggGCGgggCCGc -3'
miRNA:   3'- cAGAGCAGGG----------CGCCCG-----CuuUGCa--GGC- -5'
8988 5' -58.3 NC_002512.2 + 1959 0.68 0.821586
Target:  5'- -cCUCGUCCgccgGCGucggaGGCGgcGCGUCCGu -3'
miRNA:   3'- caGAGCAGGg---CGC-----CCGCuuUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 84683 0.68 0.852643
Target:  5'- -cCUCGUCCCGCagcccgGGGUcGAAC-UCCGu -3'
miRNA:   3'- caGAGCAGGGCG------CCCGcUUUGcAGGC- -5'
8988 5' -58.3 NC_002512.2 + 132014 0.68 0.81342
Target:  5'- aUCUCGcgUCgGCGGGCGGGucCGUCuCGg -3'
miRNA:   3'- cAGAGCa-GGgCGCCCGCUUu-GCAG-GC- -5'
8988 5' -58.3 NC_002512.2 + 6077 0.68 0.81342
Target:  5'- cGUCgUCGUCCCgGCGGucgccgcCGAcguccccggcGACGUCCGg -3'
miRNA:   3'- -CAG-AGCAGGG-CGCCc------GCU----------UUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 16074 0.68 0.818337
Target:  5'- cUCUCGUCCagggaacccuccCGGGCcGAGCGUCCc -3'
miRNA:   3'- cAGAGCAGGgc----------GCCCGcUUUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 152700 0.68 0.844371
Target:  5'- cGUCgCGUCCCcggucggggugcgGCGGGCaggggacacgcaGAGGCGuUCCGg -3'
miRNA:   3'- -CAGaGCAGGG-------------CGCCCG------------CUUUGC-AGGC- -5'
8988 5' -58.3 NC_002512.2 + 45320 0.68 0.821586
Target:  5'- ---cCGgCCCGCGGGuCGGAGggcCGUCCGc -3'
miRNA:   3'- cagaGCaGGGCGCCC-GCUUU---GCAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.