miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 169102 0.72 0.600199
Target:  5'- -cCUCGUCCuCGCgGGGCGuucgGUCCGg -3'
miRNA:   3'- caGAGCAGG-GCG-CCCGCuuugCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 5623 0.72 0.64854
Target:  5'- uUCUC-UCUCGCGGGCGucGGGCG-CCGa -3'
miRNA:   3'- cAGAGcAGGGCGCCCGC--UUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 79585 0.72 0.60985
Target:  5'- gGUCUCGcUCCuccgccucuuCGCGGGCGGcAGCG-CCGg -3'
miRNA:   3'- -CAGAGC-AGG----------GCGCCCGCU-UUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 78305 0.71 0.68704
Target:  5'- cGUCUCGuUUCCGCGacuGCGAGcgacCGUCCGg -3'
miRNA:   3'- -CAGAGC-AGGGCGCc--CGCUUu---GCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 88163 0.71 0.68704
Target:  5'- -aCUCGUCgCC-CGGGaCGGucGCGUCCGg -3'
miRNA:   3'- caGAGCAG-GGcGCCC-GCUu-UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 9885 0.71 0.6582
Target:  5'- cUCUCGaCCCGcCGGGCGAgggggagcGAgGUCCc -3'
miRNA:   3'- cAGAGCaGGGC-GCCCGCU--------UUgCAGGc -5'
8988 5' -58.3 NC_002512.2 + 11278 0.71 0.667841
Target:  5'- cGUCcuUCGagUCCGCGGGCGAGACc-CCGg -3'
miRNA:   3'- -CAG--AGCa-GGGCGCCCGCUUUGcaGGC- -5'
8988 5' -58.3 NC_002512.2 + 109019 0.71 0.667841
Target:  5'- --gUCGUCCUGCGGacccGCGgcGCGUUCGa -3'
miRNA:   3'- cagAGCAGGGCGCC----CGCuuUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 75437 0.71 0.677457
Target:  5'- ---aCGUCCgGaucgGGGCGGGACGUCCu -3'
miRNA:   3'- cagaGCAGGgCg---CCCGCUUUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 123127 0.71 0.68704
Target:  5'- cGUCggcggcCGUCCCGgGGGaCGggGCGgcggcgCCGc -3'
miRNA:   3'- -CAGa-----GCAGGGCgCCC-GCuuUGCa-----GGC- -5'
8988 5' -58.3 NC_002512.2 + 2117 0.71 0.706075
Target:  5'- -gCUCGg-UCGCGGGCGucGAGCGUUCGg -3'
miRNA:   3'- caGAGCagGGCGCCCGC--UUUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 155881 0.71 0.68704
Target:  5'- -gUUCGUCCCcgacgGCGGGCGcggGGACGagUCCGg -3'
miRNA:   3'- caGAGCAGGG-----CGCCCGC---UUUGC--AGGC- -5'
8988 5' -58.3 NC_002512.2 + 191669 0.7 0.724887
Target:  5'- cGUCcgCGUCCCG-GGGCuGGGCGaCCGg -3'
miRNA:   3'- -CAGa-GCAGGGCgCCCGcUUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 150500 0.7 0.75255
Target:  5'- uUCUCGUccgCCCGCGGGuCGGggUGcaguUCCa -3'
miRNA:   3'- cAGAGCA---GGGCGCCC-GCUuuGC----AGGc -5'
8988 5' -58.3 NC_002512.2 + 106045 0.7 0.724887
Target:  5'- aUCcCGUCgCCGCGGGCGcAGAuCGUgCGa -3'
miRNA:   3'- cAGaGCAG-GGCGCCCGC-UUU-GCAgGC- -5'
8988 5' -58.3 NC_002512.2 + 10208 0.7 0.715513
Target:  5'- -cCUCGUCCU-CGGGCGgcGCGcCCa -3'
miRNA:   3'- caGAGCAGGGcGCCCGCuuUGCaGGc -5'
8988 5' -58.3 NC_002512.2 + 129282 0.7 0.731407
Target:  5'- uGUCgugCGUCgagCCGCGGGCGcgguuuccccacccGAGCGcCCGg -3'
miRNA:   3'- -CAGa--GCAG---GGCGCCCGC--------------UUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 81435 0.7 0.75255
Target:  5'- cUC-CGUCCCGCGGGgGGcccggccccCGUCCu -3'
miRNA:   3'- cAGaGCAGGGCGCCCgCUuu-------GCAGGc -5'
8988 5' -58.3 NC_002512.2 + 104940 0.7 0.743413
Target:  5'- -cCUCGUCCgGCGucGGCGcgGCG-CCGg -3'
miRNA:   3'- caGAGCAGGgCGC--CCGCuuUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 225331 0.7 0.743413
Target:  5'- gGUCUUuUCCggaCGCGGGCGGAAuccggguauuggUGUCCGg -3'
miRNA:   3'- -CAGAGcAGG---GCGCCCGCUUU------------GCAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.