Results 61 - 80 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8988 | 5' | -58.3 | NC_002512.2 | + | 6077 | 0.68 | 0.81342 |
Target: 5'- cGUCgUCGUCCCgGCGGucgccgcCGAcguccccggcGACGUCCGg -3' miRNA: 3'- -CAG-AGCAGGG-CGCCc------GCU----------UUGCAGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 16074 | 0.68 | 0.818337 |
Target: 5'- cUCUCGUCCagggaacccuccCGGGCcGAGCGUCCc -3' miRNA: 3'- cAGAGCAGGgc----------GCCCGcUUUGCAGGc -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 1959 | 0.68 | 0.821586 |
Target: 5'- -cCUCGUCCgccgGCGucggaGGCGgcGCGUCCGu -3' miRNA: 3'- caGAGCAGGg---CGC-----CCGCuuUGCAGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 45320 | 0.68 | 0.821586 |
Target: 5'- ---cCGgCCCGCGGGuCGGAGggcCGUCCGc -3' miRNA: 3'- cagaGCaGGGCGCCC-GCUUU---GCAGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 165114 | 0.68 | 0.821586 |
Target: 5'- aUCUC-UCCCGCGGG--GAACGUCa- -3' miRNA: 3'- cAGAGcAGGGCGCCCgcUUUGCAGgc -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 126721 | 0.68 | 0.821586 |
Target: 5'- -cCUCGUCCuCGcCGGGCGcgGCGcgugCCu -3' miRNA: 3'- caGAGCAGG-GC-GCCCGCuuUGCa---GGc -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 75537 | 0.68 | 0.821586 |
Target: 5'- aUCUUGUCCCaaaaaaauccGCGGGCucgccGggGCGgggCCGc -3' miRNA: 3'- cAGAGCAGGG----------CGCCCG-----CuuUGCa--GGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 6697 | 0.68 | 0.829597 |
Target: 5'- ---cCGUcCCCGuCGGGCGGccCGUCCa -3' miRNA: 3'- cagaGCA-GGGC-GCCCGCUuuGCAGGc -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 83190 | 0.68 | 0.842844 |
Target: 5'- cGUCUcCGUCgCCcguccgcgcgcgggGCGGGgGGAGCGUCgGu -3' miRNA: 3'- -CAGA-GCAG-GG--------------CGCCCgCUUUGCAGgC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 152700 | 0.68 | 0.844371 |
Target: 5'- cGUCgCGUCCCcggucggggugcgGCGGGCaggggacacgcaGAGGCGuUCCGg -3' miRNA: 3'- -CAGaGCAGGG-------------CGCCCG------------CUUUGC-AGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 106663 | 0.68 | 0.852643 |
Target: 5'- --gUCGagCCCGCacuGGGCGGcGACGUCCu -3' miRNA: 3'- cagAGCa-GGGCG---CCCGCU-UUGCAGGc -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 84683 | 0.68 | 0.852643 |
Target: 5'- -cCUCGUCCCGCagcccgGGGUcGAAC-UCCGu -3' miRNA: 3'- caGAGCAGGGCG------CCCGcUUUGcAGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 208661 | 0.67 | 0.859975 |
Target: 5'- cGUCUcCG-CCC-CGGGCG--GCGUCCc -3' miRNA: 3'- -CAGA-GCaGGGcGCCCGCuuUGCAGGc -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 82696 | 0.67 | 0.859975 |
Target: 5'- uGUCggCGUCCgugCGCGGcGCGGGcccGCGuUCCGg -3' miRNA: 3'- -CAGa-GCAGG---GCGCC-CGCUU---UGC-AGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 204211 | 0.67 | 0.859975 |
Target: 5'- -cCUgCGUUCCGaCGaGGCGcAGCGUCUGg -3' miRNA: 3'- caGA-GCAGGGC-GC-CCGCuUUGCAGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 194978 | 0.67 | 0.859975 |
Target: 5'- gGUCUCGUCCuccucucggCGCaagaGGGCGAcGGCGgucCCGg -3' miRNA: 3'- -CAGAGCAGG---------GCG----CCCGCU-UUGCa--GGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 207679 | 0.67 | 0.859975 |
Target: 5'- -gCUC-UCCCGCcGGcCGAAGCGcUCCGu -3' miRNA: 3'- caGAGcAGGGCGcCC-GCUUUGC-AGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 218918 | 0.67 | 0.866417 |
Target: 5'- -gCUCGUgCCGCugcccuggcccgaGGGCGccGGCGUCCu -3' miRNA: 3'- caGAGCAgGGCG-------------CCCGCu-UUGCAGGc -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 218085 | 0.67 | 0.866417 |
Target: 5'- ---cCGUCCCuguccguggggaaGCGGGCGucGCGcCCGg -3' miRNA: 3'- cagaGCAGGG-------------CGCCCGCuuUGCaGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 167728 | 0.67 | 0.867123 |
Target: 5'- cUCUCGUCgaGCgGGGCGAGgagcugccggGCGUCgGc -3' miRNA: 3'- cAGAGCAGggCG-CCCGCUU----------UGCAGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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