miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 110523 0.68 0.81342
Target:  5'- cGUCgUCcaccaUCCCGCGGGCGGAGaagGcCCGg -3'
miRNA:   3'- -CAG-AGc----AGGGCGCCCGCUUUg--CaGGC- -5'
8988 5' -58.3 NC_002512.2 + 6077 0.68 0.81342
Target:  5'- cGUCgUCGUCCCgGCGGucgccgcCGAcguccccggcGACGUCCGg -3'
miRNA:   3'- -CAG-AGCAGGG-CGCCc------GCU----------UUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 132014 0.68 0.81342
Target:  5'- aUCUCGcgUCgGCGGGCGGGucCGUCuCGg -3'
miRNA:   3'- cAGAGCa-GGgCGCCCGCUUu-GCAG-GC- -5'
8988 5' -58.3 NC_002512.2 + 189198 0.69 0.804269
Target:  5'- -cCagGUCgCCGCGGGCGGcaugcucGACGUCgGa -3'
miRNA:   3'- caGagCAG-GGCGCCCGCU-------UUGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 219266 0.69 0.796655
Target:  5'- -gCUCGUCCgGCaggGGGCG-GACG-CCGa -3'
miRNA:   3'- caGAGCAGGgCG---CCCGCuUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 167223 0.69 0.796655
Target:  5'- cGUCuUCGUCggcuuCCGCgggaucGGGCGAGAgGUCCu -3'
miRNA:   3'- -CAG-AGCAG-----GGCG------CCCGCUUUgCAGGc -5'
8988 5' -58.3 NC_002512.2 + 150670 0.69 0.796655
Target:  5'- -cCUCGaggUCCGCGGGCGcgGCGgucgccCCGa -3'
miRNA:   3'- caGAGCa--GGGCGCCCGCuuUGCa-----GGC- -5'
8988 5' -58.3 NC_002512.2 + 4167 0.69 0.796655
Target:  5'- aGUCgccgCGgCUCGCGGGCGAcacauccugagGACG-CCGg -3'
miRNA:   3'- -CAGa---GCaGGGCGCCCGCU-----------UUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 108815 0.69 0.795803
Target:  5'- ---cUGUUCCGCGaGGCGugcgagguguacgGAGCGUCCGa -3'
miRNA:   3'- cagaGCAGGGCGC-CCGC-------------UUUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 104475 0.69 0.794093
Target:  5'- uGUCgUCGUucgCCCuCGGGCccggggagguucagGAAGCGUCCGg -3'
miRNA:   3'- -CAG-AGCA---GGGcGCCCG--------------CUUUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 93162 0.69 0.788934
Target:  5'- cUCUCGUCCaucCGGGCGAAGCacaggaucgccaucuUCCGa -3'
miRNA:   3'- cAGAGCAGGgc-GCCCGCUUUGc--------------AGGC- -5'
8988 5' -58.3 NC_002512.2 + 111281 0.69 0.78807
Target:  5'- uGUCgaCGUCCCGC-GGCcAGACGcCCGg -3'
miRNA:   3'- -CAGa-GCAGGGCGcCCGcUUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 128800 0.69 0.78807
Target:  5'- gGUCUcCGgcguggUCCGCGGGCGGgcccucGACG-CCGg -3'
miRNA:   3'- -CAGA-GCa-----GGGCGCCCGCU------UUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 73224 0.69 0.78807
Target:  5'- cGUacgCGUCgUCGCGGGCGAAG-GUCCc -3'
miRNA:   3'- -CAga-GCAG-GGCGCCCGCUUUgCAGGc -5'
8988 5' -58.3 NC_002512.2 + 143563 0.69 0.782858
Target:  5'- cGUCUC--CCCGCGGGCGGgccggcggagagggaGGCGcCCu -3'
miRNA:   3'- -CAGAGcaGGGCGCCCGCU---------------UUGCaGGc -5'
8988 5' -58.3 NC_002512.2 + 137193 0.69 0.770531
Target:  5'- cGUCgUCGguccgCCCgGUGGGCGgcGCGcCCGg -3'
miRNA:   3'- -CAG-AGCa----GGG-CGCCCGCuuUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 218606 0.69 0.770531
Target:  5'- gGUCUCG-CCCGCGGacuCGAAggacgcGCGUCgGg -3'
miRNA:   3'- -CAGAGCaGGGCGCCc--GCUU------UGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 202138 0.69 0.761591
Target:  5'- gGUCUCGgccgcCgCCGCgGGGCGGGugGUCg- -3'
miRNA:   3'- -CAGAGCa----G-GGCG-CCCGCUUugCAGgc -5'
8988 5' -58.3 NC_002512.2 + 81435 0.7 0.75255
Target:  5'- cUC-CGUCCCGCGGGgGGcccggccccCGUCCu -3'
miRNA:   3'- cAGaGCAGGGCGCCCgCUuu-------GCAGGc -5'
8988 5' -58.3 NC_002512.2 + 150500 0.7 0.75255
Target:  5'- uUCUCGUccgCCCGCGGGuCGGggUGcaguUCCa -3'
miRNA:   3'- cAGAGCA---GGGCGCCC-GCUuuGC----AGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.