miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 91945 0.66 0.9059
Target:  5'- gGUCUUGggcgcgaUCGCcaGGGCGGAgcggcACGUCCGg -3'
miRNA:   3'- -CAGAGCag-----GGCG--CCCGCUU-----UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 93162 0.69 0.788934
Target:  5'- cUCUCGUCCaucCGGGCGAAGCacaggaucgccaucuUCCGa -3'
miRNA:   3'- cAGAGCAGGgc-GCCCGCUUUGc--------------AGGC- -5'
8988 5' -58.3 NC_002512.2 + 95990 0.67 0.893784
Target:  5'- gGUCggCGUCCgGCGccgcgaccgccaGGCGGAACGcCCc -3'
miRNA:   3'- -CAGa-GCAGGgCGC------------CCGCUUUGCaGGc -5'
8988 5' -58.3 NC_002512.2 + 96133 0.66 0.917179
Target:  5'- cGUCgUCGUCgUCGCGGGCGcucuccuCGUCg- -3'
miRNA:   3'- -CAG-AGCAG-GGCGCCCGCuuu----GCAGgc -5'
8988 5' -58.3 NC_002512.2 + 96666 0.73 0.571396
Target:  5'- cUCcCGUCCuCGCuGGGCGGacGACGUCCc -3'
miRNA:   3'- cAGaGCAGG-GCG-CCCGCU--UUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 97186 0.67 0.896273
Target:  5'- aUCUCGcccacgacgCCCGUcugcggcggcgggccGGGCGGGACGUCg- -3'
miRNA:   3'- cAGAGCa--------GGGCG---------------CCCGCUUUGCAGgc -5'
8988 5' -58.3 NC_002512.2 + 101788 0.67 0.874083
Target:  5'- ---cCGUCCuCGC-GGCGGAGCGcuUCCGa -3'
miRNA:   3'- cagaGCAGG-GCGcCCGCUUUGC--AGGC- -5'
8988 5' -58.3 NC_002512.2 + 104475 0.69 0.794093
Target:  5'- uGUCgUCGUucgCCCuCGGGCccggggagguucagGAAGCGUCCGg -3'
miRNA:   3'- -CAG-AGCA---GGGcGCCCG--------------CUUUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 104871 0.66 0.899946
Target:  5'- -cCUCGgcCCCGCGGGCGucccuGGCc-CCGa -3'
miRNA:   3'- caGAGCa-GGGCGCCCGCu----UUGcaGGC- -5'
8988 5' -58.3 NC_002512.2 + 104940 0.7 0.743413
Target:  5'- -cCUCGUCCgGCGucGGCGcgGCG-CCGg -3'
miRNA:   3'- caGAGCAGGgCGC--CCGCuuUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 106045 0.7 0.724887
Target:  5'- aUCcCGUCgCCGCGGGCGcAGAuCGUgCGa -3'
miRNA:   3'- cAGaGCAG-GGCGCCCGC-UUU-GCAgGC- -5'
8988 5' -58.3 NC_002512.2 + 106663 0.68 0.852643
Target:  5'- --gUCGagCCCGCacuGGGCGGcGACGUCCu -3'
miRNA:   3'- cagAGCa-GGGCG---CCCGCU-UUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 107910 0.75 0.452199
Target:  5'- cUCUCGUCCCgccgGCGGGCGggGac-CCGg -3'
miRNA:   3'- cAGAGCAGGG----CGCCCGCuuUgcaGGC- -5'
8988 5' -58.3 NC_002512.2 + 108815 0.69 0.795803
Target:  5'- ---cUGUUCCGCGaGGCGugcgagguguacgGAGCGUCCGa -3'
miRNA:   3'- cagaGCAGGGCGC-CCGC-------------UUUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 109019 0.71 0.667841
Target:  5'- --gUCGUCCUGCGGacccGCGgcGCGUUCGa -3'
miRNA:   3'- cagAGCAGGGCGCC----CGCuuUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 109189 0.74 0.524224
Target:  5'- cGUCUCGaugcgaaaccgCCCGCGGGCu---CGUCCGu -3'
miRNA:   3'- -CAGAGCa----------GGGCGCCCGcuuuGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 110043 0.67 0.874083
Target:  5'- -cUUCGUCUCGUacGGGuCGAAggacACGUCCa -3'
miRNA:   3'- caGAGCAGGGCG--CCC-GCUU----UGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 110523 0.68 0.81342
Target:  5'- cGUCgUCcaccaUCCCGCGGGCGGAGaagGcCCGg -3'
miRNA:   3'- -CAG-AGc----AGGGCGCCCGCUUUg--CaGGC- -5'
8988 5' -58.3 NC_002512.2 + 111281 0.69 0.78807
Target:  5'- uGUCgaCGUCCCGC-GGCcAGACGcCCGg -3'
miRNA:   3'- -CAGa-GCAGGGCGcCCGcUUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 113133 0.67 0.874083
Target:  5'- -cCUCGgagaCCGCGcGCGggGCG-CCGg -3'
miRNA:   3'- caGAGCag--GGCGCcCGCuuUGCaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.