miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 195053 0.75 0.443572
Target:  5'- ---gCGgCCCGCGGGCGGGAggguCGUCCGg -3'
miRNA:   3'- cagaGCaGGGCGCCCGCUUU----GCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 194978 0.67 0.859975
Target:  5'- gGUCUCGUCCuccucucggCGCaagaGGGCGAcGGCGgucCCGg -3'
miRNA:   3'- -CAGAGCAGG---------GCG----CCCGCU-UUGCa--GGC- -5'
8988 5' -58.3 NC_002512.2 + 193373 0.73 0.542936
Target:  5'- -gUUCGUCgCCGCGGGCGggGaCGacaCCGa -3'
miRNA:   3'- caGAGCAG-GGCGCCCGCuuU-GCa--GGC- -5'
8988 5' -58.3 NC_002512.2 + 191669 0.7 0.724887
Target:  5'- cGUCcgCGUCCCG-GGGCuGGGCGaCCGg -3'
miRNA:   3'- -CAGa-GCAGGGCgCCCGcUUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 189835 1.08 0.004163
Target:  5'- aGUCUCGUCCCGCGGGCGAAACGUCCGc -3'
miRNA:   3'- -CAGAGCAGGGCGCCCGCUUUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 189198 0.69 0.804269
Target:  5'- -cCagGUCgCCGCGGGCGGcaugcucGACGUCgGa -3'
miRNA:   3'- caGagCAG-GGCGCCCGCU-------UUGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 184573 0.66 0.927606
Target:  5'- cUC-CGaCCCGCGGGCcggcagggcggcGGucCGUCCGa -3'
miRNA:   3'- cAGaGCaGGGCGCCCG------------CUuuGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 178668 0.67 0.874083
Target:  5'- aUCgUCGUCCa--GGuGCGAcACGUCCGa -3'
miRNA:   3'- cAG-AGCAGGgcgCC-CGCUuUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 177925 0.66 0.911645
Target:  5'- cGUCUCGUCgCuC-GGCGGcuccGCGUCCGa -3'
miRNA:   3'- -CAGAGCAGgGcGcCCGCUu---UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 176507 0.67 0.893784
Target:  5'- -cCUCGUCCU-CGGucucCGGAGCGUCCu -3'
miRNA:   3'- caGAGCAGGGcGCCc---GCUUUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 175054 0.66 0.899946
Target:  5'- -gCUCGgccggUUCCGCGGGUGcGACGUgCa -3'
miRNA:   3'- caGAGC-----AGGGCGCCCGCuUUGCAgGc -5'
8988 5' -58.3 NC_002512.2 + 169102 0.72 0.600199
Target:  5'- -cCUCGUCCuCGCgGGGCGuucgGUCCGg -3'
miRNA:   3'- caGAGCAGG-GCG-CCCGCuuugCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 167728 0.67 0.867123
Target:  5'- cUCUCGUCgaGCgGGGCGAGgagcugccggGCGUCgGc -3'
miRNA:   3'- cAGAGCAGggCG-CCCGCUU----------UGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 167223 0.69 0.796655
Target:  5'- cGUCuUCGUCggcuuCCGCgggaucGGGCGAGAgGUCCu -3'
miRNA:   3'- -CAG-AGCAG-----GGCG------CCCGCUUUgCAGGc -5'
8988 5' -58.3 NC_002512.2 + 165114 0.68 0.821586
Target:  5'- aUCUC-UCCCGCGGG--GAACGUCa- -3'
miRNA:   3'- cAGAGcAGGGCGCCCgcUUUGCAGgc -5'
8988 5' -58.3 NC_002512.2 + 159910 0.66 0.917179
Target:  5'- cUCUUGUCCCuGCuGGgggccuuguGCGAuACGUCCc -3'
miRNA:   3'- cAGAGCAGGG-CG-CC---------CGCUuUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 159389 0.73 0.570441
Target:  5'- ----gGUCCCGCggcgucgGGGCGGAAgGUCCGg -3'
miRNA:   3'- cagagCAGGGCG-------CCCGCUUUgCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 159053 0.79 0.273934
Target:  5'- aUCUCGUCCCG-GGGCGAGGCGgaCGa -3'
miRNA:   3'- cAGAGCAGGGCgCCCGCUUUGCagGC- -5'
8988 5' -58.3 NC_002512.2 + 155881 0.71 0.68704
Target:  5'- -gUUCGUCCCcgacgGCGGGCGcggGGACGagUCCGg -3'
miRNA:   3'- caGAGCAGGG-----CGCCCGC---UUUGC--AGGC- -5'
8988 5' -58.3 NC_002512.2 + 152700 0.68 0.844371
Target:  5'- cGUCgCGUCCCcggucggggugcgGCGGGCaggggacacgcaGAGGCGuUCCGg -3'
miRNA:   3'- -CAGaGCAGGG-------------CGCCCG------------CUUUGC-AGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.