miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 152322 0.76 0.401884
Target:  5'- -gCUCGgacgCCCGUGGGCGAcccgcCGUCCGc -3'
miRNA:   3'- caGAGCa---GGGCGCCCGCUuu---GCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 151978 0.66 0.927105
Target:  5'- -gCUCGcugacgaucgauaUCCgGgCGGGCGA-AUGUCCGa -3'
miRNA:   3'- caGAGC-------------AGGgC-GCCCGCUuUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 150670 0.69 0.796655
Target:  5'- -cCUCGaggUCCGCGGGCGcgGCGgucgccCCGa -3'
miRNA:   3'- caGAGCa--GGGCGCCCGCuuUGCa-----GGC- -5'
8988 5' -58.3 NC_002512.2 + 150500 0.7 0.75255
Target:  5'- uUCUCGUccgCCCGCGGGuCGGggUGcaguUCCa -3'
miRNA:   3'- cAGAGCA---GGGCGCCC-GCUuuGC----AGGc -5'
8988 5' -58.3 NC_002512.2 + 148823 0.72 0.638868
Target:  5'- -gCUCGUCCUGgGGGCG----GUCCGg -3'
miRNA:   3'- caGAGCAGGGCgCCCGCuuugCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 143666 0.7 0.743413
Target:  5'- -cCUCGUCCCccuccccgaaGcCGGGCGGggUGUCgGg -3'
miRNA:   3'- caGAGCAGGG----------C-GCCCGCUuuGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 143563 0.69 0.782858
Target:  5'- cGUCUC--CCCGCGGGCGGgccggcggagagggaGGCGcCCu -3'
miRNA:   3'- -CAGAGcaGGGCGCCCGCU---------------UUGCaGGc -5'
8988 5' -58.3 NC_002512.2 + 141712 0.72 0.628224
Target:  5'- -cCUCGUCCCGgacgcgaccguccCGGGCGAcgaGUCCa -3'
miRNA:   3'- caGAGCAGGGC-------------GCCCGCUuugCAGGc -5'
8988 5' -58.3 NC_002512.2 + 137193 0.69 0.770531
Target:  5'- cGUCgUCGguccgCCCgGUGGGCGgcGCGcCCGg -3'
miRNA:   3'- -CAG-AGCa----GGG-CGCCCGCuuUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 134746 0.78 0.333438
Target:  5'- -cCUCGaCCCGCcgGGGCGGAcCGUCCGg -3'
miRNA:   3'- caGAGCaGGGCG--CCCGCUUuGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 134527 0.67 0.874083
Target:  5'- cGUCggCGUCCCGCuGuGGCGAcagAGCGagCUGg -3'
miRNA:   3'- -CAGa-GCAGGGCG-C-CCGCU---UUGCa-GGC- -5'
8988 5' -58.3 NC_002512.2 + 133637 0.67 0.893784
Target:  5'- -cCUCGUCCCugGCGGagucCGggGCGgucgCCGc -3'
miRNA:   3'- caGAGCAGGG--CGCCc---GCuuUGCa---GGC- -5'
8988 5' -58.3 NC_002512.2 + 133392 0.67 0.880849
Target:  5'- --aUCGgugCCCGUGGGCGAcgccauGGCGcCCc -3'
miRNA:   3'- cagAGCa--GGGCGCCCGCU------UUGCaGGc -5'
8988 5' -58.3 NC_002512.2 + 132755 0.7 0.75255
Target:  5'- --gUCGUCCCgcagGCGGGCGAAG-GUCUc -3'
miRNA:   3'- cagAGCAGGG----CGCCCGCUUUgCAGGc -5'
8988 5' -58.3 NC_002512.2 + 132014 0.68 0.81342
Target:  5'- aUCUCGcgUCgGCGGGCGGGucCGUCuCGg -3'
miRNA:   3'- cAGAGCa-GGgCGCCCGCUUu-GCAG-GC- -5'
8988 5' -58.3 NC_002512.2 + 129282 0.7 0.731407
Target:  5'- uGUCgugCGUCgagCCGCGGGCGcgguuuccccacccGAGCGcCCGg -3'
miRNA:   3'- -CAGa--GCAG---GGCGCCCGC--------------UUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 128800 0.69 0.78807
Target:  5'- gGUCUcCGgcguggUCCGCGGGCGGgcccucGACG-CCGg -3'
miRNA:   3'- -CAGA-GCa-----GGGCGCCCGCU------UUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 128403 0.66 0.927606
Target:  5'- cGUCUCGagCCCG-GuGGCGggGuCG-CCGg -3'
miRNA:   3'- -CAGAGCa-GGGCgC-CCGCuuU-GCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 126721 0.68 0.821586
Target:  5'- -cCUCGUCCuCGcCGGGCGcgGCGcgugCCu -3'
miRNA:   3'- caGAGCAGG-GC-GCCCGCuuUGCa---GGc -5'
8988 5' -58.3 NC_002512.2 + 125869 0.7 0.724887
Target:  5'- cUCUgGUCCgGCGGGCacggcuggaaccGGAccGCGUCCa -3'
miRNA:   3'- cAGAgCAGGgCGCCCG------------CUU--UGCAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.