Results 81 - 100 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8988 | 5' | -58.3 | NC_002512.2 | + | 91945 | 0.66 | 0.9059 |
Target: 5'- gGUCUUGggcgcgaUCGCcaGGGCGGAgcggcACGUCCGg -3' miRNA: 3'- -CAGAGCag-----GGCG--CCCGCUU-----UGCAGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 91483 | 0.66 | 0.898119 |
Target: 5'- -aCUUGguggCCCGCGGcuCGAAgcgcaggcuccguuGCGUCCGg -3' miRNA: 3'- caGAGCa---GGGCGCCc-GCUU--------------UGCAGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 89577 | 0.66 | 0.899946 |
Target: 5'- -gCUCG-CCUGCGgcggguGGCGGGAUGUCgCGg -3' miRNA: 3'- caGAGCaGGGCGC------CCGCUUUGCAG-GC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 88163 | 0.71 | 0.68704 |
Target: 5'- -aCUCGUCgCC-CGGGaCGGucGCGUCCGg -3' miRNA: 3'- caGAGCAG-GGcGCCC-GCUu-UGCAGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 87659 | 0.66 | 0.922499 |
Target: 5'- aUCccgCGUUCCGCGaaGGCGAcGACGUCg- -3' miRNA: 3'- cAGa--GCAGGGCGC--CCGCU-UUGCAGgc -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 84683 | 0.68 | 0.852643 |
Target: 5'- -cCUCGUCCCGCagcccgGGGUcGAAC-UCCGu -3' miRNA: 3'- caGAGCAGGGCG------CCCGcUUUGcAGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 83190 | 0.68 | 0.842844 |
Target: 5'- cGUCUcCGUCgCCcguccgcgcgcgggGCGGGgGGAGCGUCgGu -3' miRNA: 3'- -CAGA-GCAG-GG--------------CGCCCgCUUUGCAGgC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 82696 | 0.67 | 0.859975 |
Target: 5'- uGUCggCGUCCgugCGCGGcGCGGGcccGCGuUCCGg -3' miRNA: 3'- -CAGa-GCAGG---GCGCC-CGCUU---UGC-AGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 81435 | 0.7 | 0.75255 |
Target: 5'- cUC-CGUCCCGCGGGgGGcccggccccCGUCCu -3' miRNA: 3'- cAGaGCAGGGCGCCCgCUuu-------GCAGGc -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 80668 | 0.77 | 0.383561 |
Target: 5'- cGUCg-GUCCCGCggcggcggcgacggGGGCGAGcgGCGUCCGg -3' miRNA: 3'- -CAGagCAGGGCG--------------CCCGCUU--UGCAGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 79585 | 0.72 | 0.60985 |
Target: 5'- gGUCUCGcUCCuccgccucuuCGCGGGCGGcAGCG-CCGg -3' miRNA: 3'- -CAGAGC-AGG----------GCGCCCGCU-UUGCaGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 78305 | 0.71 | 0.68704 |
Target: 5'- cGUCUCGuUUCCGCGacuGCGAGcgacCGUCCGg -3' miRNA: 3'- -CAGAGC-AGGGCGCc--CGCUUu---GCAGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 78040 | 0.66 | 0.917179 |
Target: 5'- gGUCgcgUGUCCgacaCGCGGGCauucauccgaGGAACGUCgGg -3' miRNA: 3'- -CAGa--GCAGG----GCGCCCG----------CUUUGCAGgC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 77307 | 0.66 | 0.927606 |
Target: 5'- cGUgUCGUUUCGCGaGGCGAcGGgGUCuCGg -3' miRNA: 3'- -CAgAGCAGGGCGC-CCGCU-UUgCAG-GC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 75537 | 0.68 | 0.821586 |
Target: 5'- aUCUUGUCCCaaaaaaauccGCGGGCucgccGggGCGgggCCGc -3' miRNA: 3'- cAGAGCAGGG----------CGCCCG-----CuuUGCa--GGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 75437 | 0.71 | 0.677457 |
Target: 5'- ---aCGUCCgGaucgGGGCGGGACGUCCu -3' miRNA: 3'- cagaGCAGGgCg---CCCGCUUUGCAGGc -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 74641 | 0.66 | 0.927606 |
Target: 5'- cGUCgaCG-CCgCGaCGGGCGGGACGgCCGc -3' miRNA: 3'- -CAGa-GCaGG-GC-GCCCGCUUUGCaGGC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 73224 | 0.69 | 0.78807 |
Target: 5'- cGUacgCGUCgUCGCGGGCGAAG-GUCCc -3' miRNA: 3'- -CAga-GCAG-GGCGCCCGCUUUgCAGGc -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 57309 | 0.79 | 0.29277 |
Target: 5'- gGUCUCGUaCUCGCGGGCGcggagGAACGUCaCGc -3' miRNA: 3'- -CAGAGCA-GGGCGCCCGC-----UUUGCAG-GC- -5' |
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8988 | 5' | -58.3 | NC_002512.2 | + | 45320 | 0.68 | 0.821586 |
Target: 5'- ---cCGgCCCGCGGGuCGGAGggcCGUCCGc -3' miRNA: 3'- cagaGCaGGGCGCCC-GCUUU---GCAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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