miRNA display CGI


Results 101 - 120 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 78040 0.66 0.917179
Target:  5'- gGUCgcgUGUCCgacaCGCGGGCauucauccgaGGAACGUCgGg -3'
miRNA:   3'- -CAGa--GCAGG----GCGCCCG----------CUUUGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 87659 0.66 0.922499
Target:  5'- aUCccgCGUUCCGCGaaGGCGAcGACGUCg- -3'
miRNA:   3'- cAGa--GCAGGGCGC--CCGCU-UUGCAGgc -5'
8988 5' -58.3 NC_002512.2 + 128403 0.66 0.927606
Target:  5'- cGUCUCGagCCCG-GuGGCGggGuCG-CCGg -3'
miRNA:   3'- -CAGAGCa-GGGCgC-CCGCuuU-GCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 74641 0.66 0.927606
Target:  5'- cGUCgaCG-CCgCGaCGGGCGGGACGgCCGc -3'
miRNA:   3'- -CAGa-GCaGG-GC-GCCCGCUUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 219038 0.67 0.893784
Target:  5'- gGUCUaCGUCgucggCCGCGGcGCGggGC-UCCc -3'
miRNA:   3'- -CAGA-GCAG-----GGCGCC-CGCuuUGcAGGc -5'
8988 5' -58.3 NC_002512.2 + 211552 0.67 0.893784
Target:  5'- uUCggcgUGUgCCGCGGgauguccccauGCGggGCGUCCc -3'
miRNA:   3'- cAGa---GCAgGGCGCC-----------CGCuuUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 106663 0.68 0.852643
Target:  5'- --gUCGagCCCGCacuGGGCGGcGACGUCCu -3'
miRNA:   3'- cagAGCa-GGGCG---CCCGCU-UUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 204211 0.67 0.859975
Target:  5'- -cCUgCGUUCCGaCGaGGCGcAGCGUCUGg -3'
miRNA:   3'- caGA-GCAGGGC-GC-CCGCuUUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 207679 0.67 0.859975
Target:  5'- -gCUC-UCCCGCcGGcCGAAGCGcUCCGu -3'
miRNA:   3'- caGAGcAGGGCGcCC-GCUUUGC-AGGC- -5'
8988 5' -58.3 NC_002512.2 + 208661 0.67 0.859975
Target:  5'- cGUCUcCG-CCC-CGGGCG--GCGUCCc -3'
miRNA:   3'- -CAGA-GCaGGGcGCCCGCuuUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 194978 0.67 0.859975
Target:  5'- gGUCUCGUCCuccucucggCGCaagaGGGCGAcGGCGgucCCGg -3'
miRNA:   3'- -CAGAGCAGG---------GCG----CCCGCU-UUGCa--GGC- -5'
8988 5' -58.3 NC_002512.2 + 218085 0.67 0.866417
Target:  5'- ---cCGUCCCuguccguggggaaGCGGGCGucGCGcCCGg -3'
miRNA:   3'- cagaGCAGGG-------------CGCCCGCuuUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 218918 0.67 0.866417
Target:  5'- -gCUCGUgCCGCugcccuggcccgaGGGCGccGGCGUCCu -3'
miRNA:   3'- caGAGCAgGGCG-------------CCCGCu-UUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 222926 0.67 0.867123
Target:  5'- -gCUCGgCCCGCGGGCc-AACGaccuggCCGg -3'
miRNA:   3'- caGAGCaGGGCGCCCGcuUUGCa-----GGC- -5'
8988 5' -58.3 NC_002512.2 + 167728 0.67 0.867123
Target:  5'- cUCUCGUCgaGCgGGGCGAGgagcugccggGCGUCgGc -3'
miRNA:   3'- cAGAGCAGggCG-CCCGCUU----------UGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 178668 0.67 0.874083
Target:  5'- aUCgUCGUCCa--GGuGCGAcACGUCCGa -3'
miRNA:   3'- cAG-AGCAGGgcgCC-CGCUuUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 101788 0.67 0.874083
Target:  5'- ---cCGUCCuCGC-GGCGGAGCGcuUCCGa -3'
miRNA:   3'- cagaGCAGG-GCGcCCGCUUUGC--AGGC- -5'
8988 5' -58.3 NC_002512.2 + 113133 0.67 0.874083
Target:  5'- -cCUCGgagaCCGCGcGCGggGCG-CCGg -3'
miRNA:   3'- caGAGCag--GGCGCcCGCuuUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 134527 0.67 0.874083
Target:  5'- cGUCggCGUCCCGCuGuGGCGAcagAGCGagCUGg -3'
miRNA:   3'- -CAGa-GCAGGGCG-C-CCGCU---UUGCa-GGC- -5'
8988 5' -58.3 NC_002512.2 + 133392 0.67 0.880849
Target:  5'- --aUCGgugCCCGUGGGCGAcgccauGGCGcCCc -3'
miRNA:   3'- cagAGCa--GGGCGCCCGCU------UUGCaGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.