miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 167223 0.69 0.796655
Target:  5'- cGUCuUCGUCggcuuCCGCgggaucGGGCGAGAgGUCCu -3'
miRNA:   3'- -CAG-AGCAG-----GGCG------CCCGCUUUgCAGGc -5'
8988 5' -58.3 NC_002512.2 + 178668 0.67 0.874083
Target:  5'- aUCgUCGUCCa--GGuGCGAcACGUCCGa -3'
miRNA:   3'- cAG-AGCAGGgcgCC-CGCUuUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 159910 0.66 0.917179
Target:  5'- cUCUUGUCCCuGCuGGgggccuuguGCGAuACGUCCc -3'
miRNA:   3'- cAGAGCAGGG-CG-CC---------CGCUuUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 150670 0.69 0.796655
Target:  5'- -cCUCGaggUCCGCGGGCGcgGCGgucgccCCGa -3'
miRNA:   3'- caGAGCa--GGGCGCCCGCuuUGCa-----GGC- -5'
8988 5' -58.3 NC_002512.2 + 220644 0.66 0.917179
Target:  5'- --gUCGUCCUGUGGcGCG-AGCG-CCa -3'
miRNA:   3'- cagAGCAGGGCGCC-CGCuUUGCaGGc -5'
8988 5' -58.3 NC_002512.2 + 109189 0.74 0.524224
Target:  5'- cGUCUCGaugcgaaaccgCCCGCGGGCu---CGUCCGu -3'
miRNA:   3'- -CAGAGCa----------GGGCGCCCGcuuuGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 220106 0.66 0.917179
Target:  5'- gGUCgaggCGUCCgugagccgccaCGCgGGGCGgcGgGUCCGg -3'
miRNA:   3'- -CAGa---GCAGG-----------GCG-CCCGCuuUgCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 193373 0.73 0.542936
Target:  5'- -gUUCGUCgCCGCGGGCGggGaCGacaCCGa -3'
miRNA:   3'- caGAGCAG-GGCGCCCGCuuU-GCa--GGC- -5'
8988 5' -58.3 NC_002512.2 + 169102 0.72 0.600199
Target:  5'- -cCUCGUCCuCGCgGGGCGuucgGUCCGg -3'
miRNA:   3'- caGAGCAGG-GCG-CCCGCuuugCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 191669 0.7 0.724887
Target:  5'- cGUCcgCGUCCCG-GGGCuGGGCGaCCGg -3'
miRNA:   3'- -CAGa-GCAGGGCgCCCGcUUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 132755 0.7 0.75255
Target:  5'- --gUCGUCCCgcagGCGGGCGAAG-GUCUc -3'
miRNA:   3'- cagAGCAGGG----CGCCCGCUUUgCAGGc -5'
8988 5' -58.3 NC_002512.2 + 143563 0.69 0.782858
Target:  5'- cGUCUC--CCCGCGGGCGGgccggcggagagggaGGCGcCCu -3'
miRNA:   3'- -CAGAGcaGGGCGCCCGCU---------------UUGCaGGc -5'
8988 5' -58.3 NC_002512.2 + 108815 0.69 0.795803
Target:  5'- ---cUGUUCCGCGaGGCGugcgagguguacgGAGCGUCCGa -3'
miRNA:   3'- cagaGCAGGGCGC-CCGC-------------UUUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 165114 0.68 0.821586
Target:  5'- aUCUC-UCCCGCGGG--GAACGUCa- -3'
miRNA:   3'- cAGAGcAGGGCGCCCgcUUUGCAGgc -5'
8988 5' -58.3 NC_002512.2 + 106663 0.68 0.852643
Target:  5'- --gUCGagCCCGCacuGGGCGGcGACGUCCu -3'
miRNA:   3'- cagAGCa-GGGCG---CCCGCU-UUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 194978 0.67 0.859975
Target:  5'- gGUCUCGUCCuccucucggCGCaagaGGGCGAcGGCGgucCCGg -3'
miRNA:   3'- -CAGAGCAGG---------GCG----CCCGCU-UUGCa--GGC- -5'
8988 5' -58.3 NC_002512.2 + 222926 0.67 0.867123
Target:  5'- -gCUCGgCCCGCGGGCc-AACGaccuggCCGg -3'
miRNA:   3'- caGAGCaGGGCGCCCGcuUUGCa-----GGC- -5'
8988 5' -58.3 NC_002512.2 + 134527 0.67 0.874083
Target:  5'- cGUCggCGUCCCGCuGuGGCGAcagAGCGagCUGg -3'
miRNA:   3'- -CAGa-GCAGGGCG-C-CCGCU---UUGCa-GGC- -5'
8988 5' -58.3 NC_002512.2 + 219038 0.67 0.893784
Target:  5'- gGUCUaCGUCgucggCCGCGGcGCGggGC-UCCc -3'
miRNA:   3'- -CAGA-GCAG-----GGCGCC-CGCuuUGcAGGc -5'
8988 5' -58.3 NC_002512.2 + 197993 0.66 0.899946
Target:  5'- cUCUCGUCUucgcgaGCGGGCGAcgGACGggggCGa -3'
miRNA:   3'- cAGAGCAGGg-----CGCCCGCU--UUGCag--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.