miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 165114 0.68 0.821586
Target:  5'- aUCUC-UCCCGCGGG--GAACGUCa- -3'
miRNA:   3'- cAGAGcAGGGCGCCCgcUUUGCAGgc -5'
8988 5' -58.3 NC_002512.2 + 207679 0.67 0.859975
Target:  5'- -gCUC-UCCCGCcGGcCGAAGCGcUCCGu -3'
miRNA:   3'- caGAGcAGGGCGcCC-GCUUUGC-AGGC- -5'
8988 5' -58.3 NC_002512.2 + 150670 0.69 0.796655
Target:  5'- -cCUCGaggUCCGCGGGCGcgGCGgucgccCCGa -3'
miRNA:   3'- caGAGCa--GGGCGCCCGCuuUGCa-----GGC- -5'
8988 5' -58.3 NC_002512.2 + 150500 0.7 0.75255
Target:  5'- uUCUCGUccgCCCGCGGGuCGGggUGcaguUCCa -3'
miRNA:   3'- cAGAGCA---GGGCGCCC-GCUuuGC----AGGc -5'
8988 5' -58.3 NC_002512.2 + 4167 0.69 0.796655
Target:  5'- aGUCgccgCGgCUCGCGGGCGAcacauccugagGACG-CCGg -3'
miRNA:   3'- -CAGa---GCaGGGCGCCCGCU-----------UUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 6077 0.68 0.81342
Target:  5'- cGUCgUCGUCCCgGCGGucgccgcCGAcguccccggcGACGUCCGg -3'
miRNA:   3'- -CAG-AGCAGGG-CGCCc------GCU----------UUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 107910 0.75 0.452199
Target:  5'- cUCUCGUCCCgccgGCGGGCGggGac-CCGg -3'
miRNA:   3'- cAGAGCAGGG----CGCCCGCuuUgcaGGC- -5'
8988 5' -58.3 NC_002512.2 + 7234 0.66 0.927606
Target:  5'- -cCUCGgCCCGgccggccguCGcGGCGGAgcgGCGUCCGu -3'
miRNA:   3'- caGAGCaGGGC---------GC-CCGCUU---UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 104475 0.69 0.794093
Target:  5'- uGUCgUCGUucgCCCuCGGGCccggggagguucagGAAGCGUCCGg -3'
miRNA:   3'- -CAG-AGCA---GGGcGCCCG--------------CUUUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 128800 0.69 0.78807
Target:  5'- gGUCUcCGgcguggUCCGCGGGCGGgcccucGACG-CCGg -3'
miRNA:   3'- -CAGA-GCa-----GGGCGCCCGCU------UUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 73224 0.69 0.78807
Target:  5'- cGUacgCGUCgUCGCGGGCGAAG-GUCCc -3'
miRNA:   3'- -CAga-GCAG-GGCGCCCGCUUUgCAGGc -5'
8988 5' -58.3 NC_002512.2 + 77307 0.66 0.927606
Target:  5'- cGUgUCGUUUCGCGaGGCGAcGGgGUCuCGg -3'
miRNA:   3'- -CAgAGCAGGGCGC-CCGCU-UUgCAG-GC- -5'
8988 5' -58.3 NC_002512.2 + 37660 0.66 0.919333
Target:  5'- --aUC-UCUCGCGGGCGAcgucgaagaggccgaAGgGUCCGg -3'
miRNA:   3'- cagAGcAGGGCGCCCGCU---------------UUgCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 5865 0.66 0.917179
Target:  5'- cGUCggaGUCCC--GGGCGu--CGUCCGa -3'
miRNA:   3'- -CAGag-CAGGGcgCCCGCuuuGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 25786 0.66 0.9059
Target:  5'- --gUCGaCCCGCGGGaUGuaauCGUCCGc -3'
miRNA:   3'- cagAGCaGGGCGCCC-GCuuu-GCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 91945 0.66 0.9059
Target:  5'- gGUCUUGggcgcgaUCGCcaGGGCGGAgcggcACGUCCGg -3'
miRNA:   3'- -CAGAGCag-----GGCG--CCCGCUU-----UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 151978 0.66 0.927105
Target:  5'- -gCUCGcugacgaucgauaUCCgGgCGGGCGA-AUGUCCGa -3'
miRNA:   3'- caGAGC-------------AGGgC-GCCCGCUuUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 75437 0.71 0.677457
Target:  5'- ---aCGUCCgGaucgGGGCGGGACGUCCu -3'
miRNA:   3'- cagaGCAGGgCg---CCCGCUUUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 109019 0.71 0.667841
Target:  5'- --gUCGUCCUGCGGacccGCGgcGCGUUCGa -3'
miRNA:   3'- cagAGCAGGGCGCC----CGCuuUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 11278 0.71 0.667841
Target:  5'- cGUCcuUCGagUCCGCGGGCGAGACc-CCGg -3'
miRNA:   3'- -CAG--AGCa-GGGCGCCCGCUUUGcaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.