miRNA display CGI


Results 81 - 100 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 5865 0.66 0.917179
Target:  5'- cGUCggaGUCCC--GGGCGu--CGUCCGa -3'
miRNA:   3'- -CAGag-CAGGGcgCCCGCuuuGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 25786 0.66 0.9059
Target:  5'- --gUCGaCCCGCGGGaUGuaauCGUCCGc -3'
miRNA:   3'- cagAGCaGGGCGCCC-GCuuu-GCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 89577 0.66 0.899946
Target:  5'- -gCUCG-CCUGCGgcggguGGCGGGAUGUCgCGg -3'
miRNA:   3'- caGAGCaGGGCGC------CCGCUUUGCAG-GC- -5'
8988 5' -58.3 NC_002512.2 + 91483 0.66 0.898119
Target:  5'- -aCUUGguggCCCGCGGcuCGAAgcgcaggcuccguuGCGUCCGg -3'
miRNA:   3'- caGAGCa---GGGCGCCc-GCUU--------------UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 97186 0.67 0.896273
Target:  5'- aUCUCGcccacgacgCCCGUcugcggcggcgggccGGGCGGGACGUCg- -3'
miRNA:   3'- cAGAGCa--------GGGCG---------------CCCGCUUUGCAGgc -5'
8988 5' -58.3 NC_002512.2 + 176507 0.67 0.893784
Target:  5'- -cCUCGUCCU-CGGucucCGGAGCGUCCu -3'
miRNA:   3'- caGAGCAGGGcGCCc---GCUUUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 133637 0.67 0.893784
Target:  5'- -cCUCGUCCCugGCGGagucCGggGCGgucgCCGc -3'
miRNA:   3'- caGAGCAGGG--CGCCc---GCuuUGCa---GGC- -5'
8988 5' -58.3 NC_002512.2 + 95990 0.67 0.893784
Target:  5'- gGUCggCGUCCgGCGccgcgaccgccaGGCGGAACGcCCc -3'
miRNA:   3'- -CAGa-GCAGGgCGC------------CCGCUUUGCaGGc -5'
8988 5' -58.3 NC_002512.2 + 7234 0.66 0.927606
Target:  5'- -cCUCGgCCCGgccggccguCGcGGCGGAgcgGCGUCCGu -3'
miRNA:   3'- caGAGCaGGGC---------GC-CCGCUU---UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 77307 0.66 0.927606
Target:  5'- cGUgUCGUUUCGCGaGGCGAcGGgGUCuCGg -3'
miRNA:   3'- -CAgAGCAGGGCGC-CCGCU-UUgCAG-GC- -5'
8988 5' -58.3 NC_002512.2 + 73224 0.69 0.78807
Target:  5'- cGUacgCGUCgUCGCGGGCGAAG-GUCCc -3'
miRNA:   3'- -CAga-GCAG-GGCGCCCGCUUUgCAGGc -5'
8988 5' -58.3 NC_002512.2 + 128800 0.69 0.78807
Target:  5'- gGUCUcCGgcguggUCCGCGGGCGGgcccucGACG-CCGg -3'
miRNA:   3'- -CAGA-GCa-----GGGCGCCCGCU------UUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 104475 0.69 0.794093
Target:  5'- uGUCgUCGUucgCCCuCGGGCccggggagguucagGAAGCGUCCGg -3'
miRNA:   3'- -CAG-AGCA---GGGcGCCCG--------------CUUUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 4167 0.69 0.796655
Target:  5'- aGUCgccgCGgCUCGCGGGCGAcacauccugagGACG-CCGg -3'
miRNA:   3'- -CAGa---GCaGGGCGCCCGCU-----------UUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 6077 0.68 0.81342
Target:  5'- cGUCgUCGUCCCgGCGGucgccgcCGAcguccccggcGACGUCCGg -3'
miRNA:   3'- -CAG-AGCAGGG-CGCCc------GCU----------UUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 132014 0.68 0.81342
Target:  5'- aUCUCGcgUCgGCGGGCGGGucCGUCuCGg -3'
miRNA:   3'- cAGAGCa-GGgCGCCCGCUUu-GCAG-GC- -5'
8988 5' -58.3 NC_002512.2 + 91945 0.66 0.9059
Target:  5'- gGUCUUGggcgcgaUCGCcaGGGCGGAgcggcACGUCCGg -3'
miRNA:   3'- -CAGAGCag-----GGCG--CCCGCUU-----UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 110043 0.67 0.874083
Target:  5'- -cUUCGUCUCGUacGGGuCGAAggacACGUCCa -3'
miRNA:   3'- caGAGCAGGGCG--CCC-GCUU----UGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 1827 0.67 0.874768
Target:  5'- cGUCUCccgcgccgcagccgUCCGCGGGCGucucgccgcCGUCCGg -3'
miRNA:   3'- -CAGAGca------------GGGCGCCCGCuuu------GCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 15643 0.67 0.880849
Target:  5'- -cCUCGg-CCGCGGGCGGcgagccGACGagCCGc -3'
miRNA:   3'- caGAGCagGGCGCCCGCU------UUGCa-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.