miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8988 5' -58.3 NC_002512.2 + 175054 0.66 0.899946
Target:  5'- -gCUCGgccggUUCCGCGGGUGcGACGUgCa -3'
miRNA:   3'- caGAGC-----AGGGCGCCCGCuUUGCAgGc -5'
8988 5' -58.3 NC_002512.2 + 223256 0.66 0.899339
Target:  5'- cUCgggCGUCCgCGUcgucgggGGGCGGGACG-CCGc -3'
miRNA:   3'- cAGa--GCAGG-GCG-------CCCGCUUUGCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 91483 0.66 0.898119
Target:  5'- -aCUUGguggCCCGCGGcuCGAAgcgcaggcuccguuGCGUCCGg -3'
miRNA:   3'- caGAGCa---GGGCGCCc-GCUU--------------UGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 97186 0.67 0.896273
Target:  5'- aUCUCGcccacgacgCCCGUcugcggcggcgggccGGGCGGGACGUCg- -3'
miRNA:   3'- cAGAGCa--------GGGCG---------------CCCGCUUUGCAGgc -5'
8988 5' -58.3 NC_002512.2 + 220005 0.67 0.893784
Target:  5'- -cCUCGcCCgGCGGGuCGAGAgG-CCGc -3'
miRNA:   3'- caGAGCaGGgCGCCC-GCUUUgCaGGC- -5'
8988 5' -58.3 NC_002512.2 + 219038 0.67 0.893784
Target:  5'- gGUCUaCGUCgucggCCGCGGcGCGggGC-UCCc -3'
miRNA:   3'- -CAGA-GCAG-----GGCGCC-CGCuuUGcAGGc -5'
8988 5' -58.3 NC_002512.2 + 211552 0.67 0.893784
Target:  5'- uUCggcgUGUgCCGCGGgauguccccauGCGggGCGUCCc -3'
miRNA:   3'- cAGa---GCAgGGCGCC-----------CGCuuUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 176507 0.67 0.893784
Target:  5'- -cCUCGUCCU-CGGucucCGGAGCGUCCu -3'
miRNA:   3'- caGAGCAGGGcGCCc---GCUUUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 133637 0.67 0.893784
Target:  5'- -cCUCGUCCCugGCGGagucCGggGCGgucgCCGc -3'
miRNA:   3'- caGAGCAGGG--CGCCc---GCuuUGCa---GGC- -5'
8988 5' -58.3 NC_002512.2 + 95990 0.67 0.893784
Target:  5'- gGUCggCGUCCgGCGccgcgaccgccaGGCGGAACGcCCc -3'
miRNA:   3'- -CAGa-GCAGGgCGC------------CCGCUUUGCaGGc -5'
8988 5' -58.3 NC_002512.2 + 9673 0.67 0.887417
Target:  5'- -aCUCGUCCCcCGGGCcgc-CGUCgGg -3'
miRNA:   3'- caGAGCAGGGcGCCCGcuuuGCAGgC- -5'
8988 5' -58.3 NC_002512.2 + 133392 0.67 0.880849
Target:  5'- --aUCGgugCCCGUGGGCGAcgccauGGCGcCCc -3'
miRNA:   3'- cagAGCa--GGGCGCCCGCU------UUGCaGGc -5'
8988 5' -58.3 NC_002512.2 + 221342 0.67 0.880849
Target:  5'- -gCUCGa-CCGCGGGagaagauggaGGAGCGUCCa -3'
miRNA:   3'- caGAGCagGGCGCCCg---------CUUUGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 15643 0.67 0.880849
Target:  5'- -cCUCGg-CCGCGGGCGGcgagccGACGagCCGc -3'
miRNA:   3'- caGAGCagGGCGCCCGCU------UUGCa-GGC- -5'
8988 5' -58.3 NC_002512.2 + 1827 0.67 0.874768
Target:  5'- cGUCUCccgcgccgcagccgUCCGCGGGCGucucgccgcCGUCCGg -3'
miRNA:   3'- -CAGAGca------------GGGCGCCCGCuuu------GCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 110043 0.67 0.874083
Target:  5'- -cUUCGUCUCGUacGGGuCGAAggacACGUCCa -3'
miRNA:   3'- caGAGCAGGGCG--CCC-GCUU----UGCAGGc -5'
8988 5' -58.3 NC_002512.2 + 178668 0.67 0.874083
Target:  5'- aUCgUCGUCCa--GGuGCGAcACGUCCGa -3'
miRNA:   3'- cAG-AGCAGGgcgCC-CGCUuUGCAGGC- -5'
8988 5' -58.3 NC_002512.2 + 101788 0.67 0.874083
Target:  5'- ---cCGUCCuCGC-GGCGGAGCGcuUCCGa -3'
miRNA:   3'- cagaGCAGG-GCGcCCGCUUUGC--AGGC- -5'
8988 5' -58.3 NC_002512.2 + 134527 0.67 0.874083
Target:  5'- cGUCggCGUCCCGCuGuGGCGAcagAGCGagCUGg -3'
miRNA:   3'- -CAGa-GCAGGGCG-C-CCGCU---UUGCa-GGC- -5'
8988 5' -58.3 NC_002512.2 + 113133 0.67 0.874083
Target:  5'- -cCUCGgagaCCGCGcGCGggGCG-CCGg -3'
miRNA:   3'- caGAGCag--GGCGCcCGCuuUGCaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.