miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8989 3' -58.6 NC_002512.2 + 166776 0.66 0.905629
Target:  5'- cGGGGUggguuaUCGCCGGCgucauCGAaAUCaaggguggggGCGUCc -3'
miRNA:   3'- uCCCCA------AGCGGCCG-----GCUaUAG----------CGCAG- -5'
8989 3' -58.6 NC_002512.2 + 46247 0.66 0.905629
Target:  5'- gGGGGGUcagacCGCCuGGCUGAgcgaaCGCuGUCu -3'
miRNA:   3'- -UCCCCAa----GCGG-CCGGCUaua--GCG-CAG- -5'
8989 3' -58.6 NC_002512.2 + 76110 0.66 0.905629
Target:  5'- aGGcGGGggCGCCgGGgUGGUGUCGaugaCGUCg -3'
miRNA:   3'- -UC-CCCaaGCGG-CCgGCUAUAGC----GCAG- -5'
8989 3' -58.6 NC_002512.2 + 135162 0.66 0.905629
Target:  5'- cGGGGUUCGCCuGGauCCug-GUC-CGUCa -3'
miRNA:   3'- uCCCCAAGCGG-CC--GGcuaUAGcGCAG- -5'
8989 3' -58.6 NC_002512.2 + 32549 0.66 0.903249
Target:  5'- uGGGGGaucuucuccagcCGCCGggcgccgcggguGCCGggGUCGUGUCg -3'
miRNA:   3'- -UCCCCaa----------GCGGC------------CGGCuaUAGCGCAG- -5'
8989 3' -58.6 NC_002512.2 + 38392 0.66 0.899614
Target:  5'- aAGGGaGcgCGCCGGUCGccg-CGCuGUCc -3'
miRNA:   3'- -UCCC-CaaGCGGCCGGCuauaGCG-CAG- -5'
8989 3' -58.6 NC_002512.2 + 79951 0.66 0.899614
Target:  5'- cGGGGGUcCGCCuGCCGucggaaGCGgUCg -3'
miRNA:   3'- -UCCCCAaGCGGcCGGCuauag-CGC-AG- -5'
8989 3' -58.6 NC_002512.2 + 131048 0.66 0.899614
Target:  5'- cGGGGGaggacggCGCCGcGCCGGaggccgAUC-CGUCg -3'
miRNA:   3'- -UCCCCaa-----GCGGC-CGGCUa-----UAGcGCAG- -5'
8989 3' -58.6 NC_002512.2 + 153326 0.66 0.899614
Target:  5'- uGGGGUgguucCGCUgGGCCGGUc-CGgGUCg -3'
miRNA:   3'- uCCCCAa----GCGG-CCGGCUAuaGCgCAG- -5'
8989 3' -58.6 NC_002512.2 + 129024 0.66 0.899614
Target:  5'- gAGGaGUUCGaaCCGGCCGugcggGUCGUcuGUCa -3'
miRNA:   3'- -UCCcCAAGC--GGCCGGCua---UAGCG--CAG- -5'
8989 3' -58.6 NC_002512.2 + 98650 0.66 0.899614
Target:  5'- aGGGGaGUUCGUCGGCaGAca-UGCGUUc -3'
miRNA:   3'- -UCCC-CAAGCGGCCGgCUauaGCGCAG- -5'
8989 3' -58.6 NC_002512.2 + 95720 0.66 0.897769
Target:  5'- gAGGGGaagacggcuccccgUcccCGCCGGCCGGgacgCGCGcCg -3'
miRNA:   3'- -UCCCC--------------Aa--GCGGCCGGCUaua-GCGCaG- -5'
8989 3' -58.6 NC_002512.2 + 218603 0.66 0.897149
Target:  5'- cGGGGUcUCGCCcGCgGAcucgaaggacgCGCGUCg -3'
miRNA:   3'- uCCCCA-AGCGGcCGgCUaua--------GCGCAG- -5'
8989 3' -58.6 NC_002512.2 + 225403 0.66 0.893389
Target:  5'- cGGGGacggCGCCggGGUCGggGUCGgGUUg -3'
miRNA:   3'- uCCCCaa--GCGG--CCGGCuaUAGCgCAG- -5'
8989 3' -58.6 NC_002512.2 + 57058 0.66 0.893389
Target:  5'- cGGGGggCGCCGGgcgaaCGGUAggCGCa-- -3'
miRNA:   3'- uCCCCaaGCGGCCg----GCUAUa-GCGcag -5'
8989 3' -58.6 NC_002512.2 + 4863 0.66 0.893389
Target:  5'- cGGGGUUCGCCGcgugcggcGCCGGcUGgaggaGCGg- -3'
miRNA:   3'- uCCCCAAGCGGC--------CGGCU-AUag---CGCag -5'
8989 3' -58.6 NC_002512.2 + 205104 0.66 0.893389
Target:  5'- gGGGGGcgCGcCCGGacCCGAg--CGgGUCu -3'
miRNA:   3'- -UCCCCaaGC-GGCC--GGCUauaGCgCAG- -5'
8989 3' -58.6 NC_002512.2 + 194223 0.66 0.886955
Target:  5'- gAGGGacUUCGU--GCCGGUGUCGuCGUCg -3'
miRNA:   3'- -UCCCc-AAGCGgcCGGCUAUAGC-GCAG- -5'
8989 3' -58.6 NC_002512.2 + 100068 0.66 0.886955
Target:  5'- cGGGGgcCGCgGGCCGGggacggaGCGgUCa -3'
miRNA:   3'- uCCCCaaGCGgCCGGCUauag---CGC-AG- -5'
8989 3' -58.6 NC_002512.2 + 96000 0.66 0.886955
Target:  5'- -cGGGacCGCCGGCCGAgc-CGC-UCc -3'
miRNA:   3'- ucCCCaaGCGGCCGGCUauaGCGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.