Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8989 | 5' | -53.8 | NC_002512.2 | + | 43445 | 0.7 | 0.888748 |
Target: 5'- -cGUCGuCGgUGUacaggaggccCAGCCGGCcGAGCACg -3' miRNA: 3'- caCAGC-GCaAUA----------GUCGGCCG-UUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 130534 | 0.69 | 0.908116 |
Target: 5'- -gGUCGCGggAaCAuGCCGGaCAGGCGg -3' miRNA: 3'- caCAGCGCaaUaGU-CGGCC-GUUCGUg -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 138527 | 0.69 | 0.924826 |
Target: 5'- -gGUCGCGUcGUCcagcccgucgagcAGCUGGCAGGaGCg -3' miRNA: 3'- caCAGCGCAaUAG-------------UCGGCCGUUCgUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 152416 | 0.69 | 0.908116 |
Target: 5'- cGUG-CGCGggAUCc-CCGGCGAcGCGCg -3' miRNA: 3'- -CACaGCGCaaUAGucGGCCGUU-CGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 132109 | 0.69 | 0.925367 |
Target: 5'- -cGUC-CGUc-UCGGCCGGC-AGCGCc -3' miRNA: 3'- caCAGcGCAauAGUCGGCCGuUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 113646 | 0.68 | 0.953437 |
Target: 5'- -aGUCGUaGUUGgcgCGGCCGGCcgcgaggguGCGCg -3' miRNA: 3'- caCAGCG-CAAUa--GUCGGCCGuu-------CGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 131190 | 0.68 | 0.949347 |
Target: 5'- aGUGgaagagCGCGUaGUCGuGCgCGGCcAGGCGCu -3' miRNA: 3'- -CACa-----GCGCAaUAGU-CG-GCCG-UUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 111154 | 0.68 | 0.945024 |
Target: 5'- uUGUUGCuGUUgaacagcacGUC-GCCGGCGAGCGg -3' miRNA: 3'- cACAGCG-CAA---------UAGuCGGCCGUUCGUg -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 78428 | 0.68 | 0.935672 |
Target: 5'- uUG-CGCGUUuUCGGCCGGCGccaucuugAGC-Ca -3' miRNA: 3'- cACaGCGCAAuAGUCGGCCGU--------UCGuG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 120300 | 0.68 | 0.949347 |
Target: 5'- -cGUCGgcUUGUgCAGCCGGU-AGCACg -3' miRNA: 3'- caCAGCgcAAUA-GUCGGCCGuUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 111707 | 0.68 | 0.935672 |
Target: 5'- -gGUCGCGgaugacgaCGGagucuCCGGCGGGCACg -3' miRNA: 3'- caCAGCGCaaua----GUC-----GGCCGUUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 137771 | 0.68 | 0.953437 |
Target: 5'- cGUGUcCGCGgucuggagGUCGGCgcuCGGCGGGcCGCg -3' miRNA: 3'- -CACA-GCGCaa------UAGUCG---GCCGUUC-GUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 89441 | 0.68 | 0.945024 |
Target: 5'- gGUGgCGCGagcugUGUCGGaaGGCGAGCGa -3' miRNA: 3'- -CACaGCGCa----AUAGUCggCCGUUCGUg -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 200098 | 0.68 | 0.940466 |
Target: 5'- -cGUCGCGggGUC-GCCGG--GGUACu -3' miRNA: 3'- caCAGCGCaaUAGuCGGCCguUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 108325 | 0.68 | 0.930639 |
Target: 5'- -cGgcgCGCGgcgggcgGUCGGCgCGGCAuGCGCg -3' miRNA: 3'- caCa--GCGCaa-----UAGUCG-GCCGUuCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 96050 | 0.67 | 0.970548 |
Target: 5'- -aGUCGCGgaagC-GCCGGC-GGUACg -3' miRNA: 3'- caCAGCGCaauaGuCGGCCGuUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 17442 | 0.67 | 0.970548 |
Target: 5'- --cUCGCGgcggUcgCGGCCGGCcGGCcCg -3' miRNA: 3'- cacAGCGCa---AuaGUCGGCCGuUCGuG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 2203 | 0.67 | 0.967555 |
Target: 5'- -cGUCGuCGUcucgGUC-GCCGGC-GGCGCc -3' miRNA: 3'- caCAGC-GCAa---UAGuCGGCCGuUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 82944 | 0.67 | 0.970548 |
Target: 5'- -cGUCGCGcuucaCGGCCaGCAGGuCGCg -3' miRNA: 3'- caCAGCGCaaua-GUCGGcCGUUC-GUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 84767 | 0.67 | 0.957299 |
Target: 5'- -gGUagGCGUaguagauggccgUGUCGGCCGGCAGcCGCg -3' miRNA: 3'- caCAg-CGCA------------AUAGUCGGCCGUUcGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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