miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8989 5' -53.8 NC_002512.2 + 189171 1.09 0.006155
Target:  5'- cGUGUCGCGUUAUCAGCCGGCAAGCACc -3'
miRNA:   3'- -CACAGCGCAAUAGUCGGCCGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 184533 0.89 0.111367
Target:  5'- -aGUCGCGggGUCAGCCGGC-GGCGCg -3'
miRNA:   3'- caCAGCGCaaUAGUCGGCCGuUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 144715 0.73 0.715891
Target:  5'- -cGUCGCGccuggGUCAGCUGGC--GCACu -3'
miRNA:   3'- caCAGCGCaa---UAGUCGGCCGuuCGUG- -5'
8989 5' -53.8 NC_002512.2 + 40752 0.73 0.725807
Target:  5'- ---aCGCGaUAUCGGCCGGCGAaccccuaucGCGCg -3'
miRNA:   3'- cacaGCGCaAUAGUCGGCCGUU---------CGUG- -5'
8989 5' -53.8 NC_002512.2 + 134141 0.73 0.745386
Target:  5'- -cGUCGCGgcgcgcGUCccGGCCGGCGGGgACg -3'
miRNA:   3'- caCAGCGCaa----UAG--UCGGCCGUUCgUG- -5'
8989 5' -53.8 NC_002512.2 + 202828 0.73 0.745386
Target:  5'- cGUGUCGCaGUUgAUCGGCCaGUucAGCACg -3'
miRNA:   3'- -CACAGCG-CAA-UAGUCGGcCGu-UCGUG- -5'
8989 5' -53.8 NC_002512.2 + 26173 0.73 0.755032
Target:  5'- cGUGUCGCa-----GGCCGGCGGGCGa -3'
miRNA:   3'- -CACAGCGcaauagUCGGCCGUUCGUg -5'
8989 5' -53.8 NC_002512.2 + 117129 0.72 0.78328
Target:  5'- cGUGUCGCGggA-CGGCCGGCucucCGCc -3'
miRNA:   3'- -CACAGCGCaaUaGUCGGCCGuuc-GUG- -5'
8989 5' -53.8 NC_002512.2 + 140970 0.72 0.801448
Target:  5'- -gGUCGCGUggugaccgAUCGGaUCGGgGGGCACg -3'
miRNA:   3'- caCAGCGCAa-------UAGUC-GGCCgUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 78378 0.72 0.813804
Target:  5'- cGUGUCGCGcgaaccgcgaGGCCGGCuggagaucgaGAGCGCg -3'
miRNA:   3'- -CACAGCGCaauag-----UCGGCCG----------UUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 10542 0.71 0.817276
Target:  5'- --cUCGCGgacgccgggCAGCCGGCGGGcCACg -3'
miRNA:   3'- cacAGCGCaaua-----GUCGGCCGUUC-GUG- -5'
8989 5' -53.8 NC_002512.2 + 228581 0.71 0.85201
Target:  5'- ---cCGCGgucgUGUCGG-CGGCAGGCGCc -3'
miRNA:   3'- cacaGCGCa---AUAGUCgGCCGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 121365 0.71 0.859781
Target:  5'- -cGUCGgGUcccCGGCCGGuCGGGCGCc -3'
miRNA:   3'- caCAGCgCAauaGUCGGCC-GUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 172018 0.7 0.867345
Target:  5'- -cGUCGCcugGUcCGGCCGGCA-GCAUg -3'
miRNA:   3'- caCAGCGcaaUA-GUCGGCCGUuCGUG- -5'
8989 5' -53.8 NC_002512.2 + 95191 0.7 0.874698
Target:  5'- aUGUCG-Gg---CAGcCCGGCGAGCGCc -3'
miRNA:   3'- cACAGCgCaauaGUC-GGCCGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 132710 0.7 0.881834
Target:  5'- cGUGUCGacc-GUCAGCacgaaGGCGAGCAg -3'
miRNA:   3'- -CACAGCgcaaUAGUCGg----CCGUUCGUg -5'
8989 5' -53.8 NC_002512.2 + 217561 0.7 0.888067
Target:  5'- uUGUCGCGUUcgCgacggcgAGCCGGUccggcGGCGCc -3'
miRNA:   3'- cACAGCGCAAuaG-------UCGGCCGu----UCGUG- -5'
8989 5' -53.8 NC_002512.2 + 217778 0.7 0.888748
Target:  5'- -cGUCGcCGggGUCgcGGCCGGCuGGCGg -3'
miRNA:   3'- caCAGC-GCaaUAG--UCGGCCGuUCGUg -5'
8989 5' -53.8 NC_002512.2 + 43445 0.7 0.888748
Target:  5'- -cGUCGuCGgUGUacaggaggccCAGCCGGCcGAGCACg -3'
miRNA:   3'- caCAGC-GCaAUA----------GUCGGCCG-UUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 125300 0.7 0.888748
Target:  5'- --uUCGUGUUGaagCAGCUGGCGaacAGCGCc -3'
miRNA:   3'- cacAGCGCAAUa--GUCGGCCGU---UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.