Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8989 | 5' | -53.8 | NC_002512.2 | + | 40752 | 0.73 | 0.725807 |
Target: 5'- ---aCGCGaUAUCGGCCGGCGAaccccuaucGCGCg -3' miRNA: 3'- cacaGCGCaAUAGUCGGCCGUU---------CGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 144715 | 0.73 | 0.715891 |
Target: 5'- -cGUCGCGccuggGUCAGCUGGC--GCACu -3' miRNA: 3'- caCAGCGCaa---UAGUCGGCCGuuCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 184533 | 0.89 | 0.111367 |
Target: 5'- -aGUCGCGggGUCAGCCGGC-GGCGCg -3' miRNA: 3'- caCAGCGCaaUAGUCGGCCGuUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 189171 | 1.09 | 0.006155 |
Target: 5'- cGUGUCGCGUUAUCAGCCGGCAAGCACc -3' miRNA: 3'- -CACAGCGCAAUAGUCGGCCGUUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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