miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8989 5' -53.8 NC_002512.2 + 2203 0.67 0.967555
Target:  5'- -cGUCGuCGUcucgGUC-GCCGGC-GGCGCc -3'
miRNA:   3'- caCAGC-GCAa---UAGuCGGCCGuUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 10542 0.71 0.817276
Target:  5'- --cUCGCGgacgccgggCAGCCGGCGGGcCACg -3'
miRNA:   3'- cacAGCGCaaua-----GUCGGCCGUUC-GUG- -5'
8989 5' -53.8 NC_002512.2 + 17442 0.67 0.970548
Target:  5'- --cUCGCGgcggUcgCGGCCGGCcGGCcCg -3'
miRNA:   3'- cacAGCGCa---AuaGUCGGCCGuUCGuG- -5'
8989 5' -53.8 NC_002512.2 + 18424 0.66 0.980556
Target:  5'- gGUGUCGgaucCGggG-CAGCCG-CAGGCGCc -3'
miRNA:   3'- -CACAGC----GCaaUaGUCGGCcGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 26173 0.73 0.755032
Target:  5'- cGUGUCGCa-----GGCCGGCGGGCGa -3'
miRNA:   3'- -CACAGCGcaauagUCGGCCGUUCGUg -5'
8989 5' -53.8 NC_002512.2 + 35455 0.67 0.967555
Target:  5'- -gGUCGCagaGUUGUUGGCUGGCGAcguGUAUg -3'
miRNA:   3'- caCAGCG---CAAUAGUCGGCCGUU---CGUG- -5'
8989 5' -53.8 NC_002512.2 + 40752 0.73 0.725807
Target:  5'- ---aCGCGaUAUCGGCCGGCGAaccccuaucGCGCg -3'
miRNA:   3'- cacaGCGCaAUAGUCGGCCGUU---------CGUG- -5'
8989 5' -53.8 NC_002512.2 + 43445 0.7 0.888748
Target:  5'- -cGUCGuCGgUGUacaggaggccCAGCCGGCcGAGCACg -3'
miRNA:   3'- caCAGC-GCaAUA----------GUCGGCCG-UUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 78378 0.72 0.813804
Target:  5'- cGUGUCGCGcgaaccgcgaGGCCGGCuggagaucgaGAGCGCg -3'
miRNA:   3'- -CACAGCGCaauag-----UCGGCCG----------UUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 78428 0.68 0.935672
Target:  5'- uUG-CGCGUUuUCGGCCGGCGccaucuugAGC-Ca -3'
miRNA:   3'- cACaGCGCAAuAGUCGGCCGU--------UCGuG- -5'
8989 5' -53.8 NC_002512.2 + 82944 0.67 0.970548
Target:  5'- -cGUCGCGcuucaCGGCCaGCAGGuCGCg -3'
miRNA:   3'- caCAGCGCaaua-GUCGGcCGUUC-GUG- -5'
8989 5' -53.8 NC_002512.2 + 84767 0.67 0.957299
Target:  5'- -gGUagGCGUaguagauggccgUGUCGGCCGGCAGcCGCg -3'
miRNA:   3'- caCAg-CGCA------------AUAGUCGGCCGUUcGUG- -5'
8989 5' -53.8 NC_002512.2 + 89441 0.68 0.945024
Target:  5'- gGUGgCGCGagcugUGUCGGaaGGCGAGCGa -3'
miRNA:   3'- -CACaGCGCa----AUAGUCggCCGUUCGUg -5'
8989 5' -53.8 NC_002512.2 + 94878 0.67 0.967864
Target:  5'- -cGUCGUGUaggaugucgguccacGUCAGCagcucucggGGCGAGCACa -3'
miRNA:   3'- caCAGCGCAa--------------UAGUCGg--------CCGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 95191 0.7 0.874698
Target:  5'- aUGUCG-Gg---CAGcCCGGCGAGCGCc -3'
miRNA:   3'- cACAGCgCaauaGUC-GGCCGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 96050 0.67 0.970548
Target:  5'- -aGUCGCGgaagC-GCCGGC-GGUACg -3'
miRNA:   3'- caCAGCGCaauaGuCGGCCGuUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 104261 0.65 0.983936
Target:  5'- -gGUCGUGUgugGUCGccGCCGGCGucuuucucgcguccGGCGg -3'
miRNA:   3'- caCAGCGCAa--UAGU--CGGCCGU--------------UCGUg -5'
8989 5' -53.8 NC_002512.2 + 108325 0.68 0.930639
Target:  5'- -cGgcgCGCGgcgggcgGUCGGCgCGGCAuGCGCg -3'
miRNA:   3'- caCa--GCGCaa-----UAGUCG-GCCGUuCGUG- -5'
8989 5' -53.8 NC_002512.2 + 111154 0.68 0.945024
Target:  5'- uUGUUGCuGUUgaacagcacGUC-GCCGGCGAGCGg -3'
miRNA:   3'- cACAGCG-CAA---------UAGuCGGCCGUUCGUg -5'
8989 5' -53.8 NC_002512.2 + 111707 0.68 0.935672
Target:  5'- -gGUCGCGgaugacgaCGGagucuCCGGCGGGCACg -3'
miRNA:   3'- caCAGCGCaaua----GUC-----GGCCGUUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.