miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8989 5' -53.8 NC_002512.2 + 111777 0.67 0.960936
Target:  5'- -cGUCaGCGaUA-CGGCCGGUccGCGCg -3'
miRNA:   3'- caCAG-CGCaAUaGUCGGCCGuuCGUG- -5'
8989 5' -53.8 NC_002512.2 + 113041 0.66 0.973338
Target:  5'- ---aCGCGUgGUuguucgucaCGGCCGGC-AGCACg -3'
miRNA:   3'- cacaGCGCAaUA---------GUCGGCCGuUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 113646 0.68 0.953437
Target:  5'- -aGUCGUaGUUGgcgCGGCCGGCcgcgaggguGCGCg -3'
miRNA:   3'- caCAGCG-CAAUa--GUCGGCCGuu-------CGUG- -5'
8989 5' -53.8 NC_002512.2 + 115187 0.66 0.982603
Target:  5'- cGUGgaaCGCGauggUGUgGGCCGcGCAGGC-Ca -3'
miRNA:   3'- -CACa--GCGCa---AUAgUCGGC-CGUUCGuG- -5'
8989 5' -53.8 NC_002512.2 + 117129 0.72 0.78328
Target:  5'- cGUGUCGCGggA-CGGCCGGCucucCGCc -3'
miRNA:   3'- -CACAGCGCaaUaGUCGGCCGuuc-GUG- -5'
8989 5' -53.8 NC_002512.2 + 120300 0.68 0.949347
Target:  5'- -cGUCGgcUUGUgCAGCCGGU-AGCACg -3'
miRNA:   3'- caCAGCgcAAUA-GUCGGCCGuUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 121365 0.71 0.859781
Target:  5'- -cGUCGgGUcccCGGCCGGuCGGGCGCc -3'
miRNA:   3'- caCAGCgCAauaGUCGGCC-GUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 121886 0.66 0.973338
Target:  5'- -gGUCGCGggGgacGCuCGGCGAcGCGCg -3'
miRNA:   3'- caCAGCGCaaUaguCG-GCCGUU-CGUG- -5'
8989 5' -53.8 NC_002512.2 + 123529 0.67 0.964353
Target:  5'- -cGUCGUcugGUacUCcgAGUCGGCGGGCGCg -3'
miRNA:   3'- caCAGCG---CAauAG--UCGGCCGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 125300 0.7 0.888748
Target:  5'- --uUCGUGUUGaagCAGCUGGCGaacAGCGCc -3'
miRNA:   3'- cacAGCGCAAUa--GUCGGCCGU---UCGUG- -5'
8989 5' -53.8 NC_002512.2 + 126482 0.66 0.975931
Target:  5'- -cGUCGCGUcgcccggAUCc-CCGGCGuugGGCGCg -3'
miRNA:   3'- caCAGCGCAa------UAGucGGCCGU---UCGUG- -5'
8989 5' -53.8 NC_002512.2 + 129281 0.67 0.960936
Target:  5'- cUGUCGUGc-GUCgAGCCG-CGGGCGCg -3'
miRNA:   3'- cACAGCGCaaUAG-UCGGCcGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 130142 0.66 0.975173
Target:  5'- gGUGUCGCGgccgCggggcccggcggcgGGCCGGCccgcgacGGCGCg -3'
miRNA:   3'- -CACAGCGCaauaG--------------UCGGCCGu------UCGUG- -5'
8989 5' -53.8 NC_002512.2 + 130534 0.69 0.908116
Target:  5'- -gGUCGCGggAaCAuGCCGGaCAGGCGg -3'
miRNA:   3'- caCAGCGCaaUaGU-CGGCC-GUUCGUg -5'
8989 5' -53.8 NC_002512.2 + 131190 0.68 0.949347
Target:  5'- aGUGgaagagCGCGUaGUCGuGCgCGGCcAGGCGCu -3'
miRNA:   3'- -CACa-----GCGCAaUAGU-CG-GCCG-UUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 132109 0.69 0.925367
Target:  5'- -cGUC-CGUc-UCGGCCGGC-AGCGCc -3'
miRNA:   3'- caCAGcGCAauAGUCGGCCGuUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 132710 0.7 0.881834
Target:  5'- cGUGUCGacc-GUCAGCacgaaGGCGAGCAg -3'
miRNA:   3'- -CACAGCgcaaUAGUCGg----CCGUUCGUg -5'
8989 5' -53.8 NC_002512.2 + 134141 0.73 0.745386
Target:  5'- -cGUCGCGgcgcgcGUCccGGCCGGCGGGgACg -3'
miRNA:   3'- caCAGCGCaa----UAG--UCGGCCGUUCgUG- -5'
8989 5' -53.8 NC_002512.2 + 137771 0.68 0.953437
Target:  5'- cGUGUcCGCGgucuggagGUCGGCgcuCGGCGGGcCGCg -3'
miRNA:   3'- -CACA-GCGCaa------UAGUCG---GCCGUUC-GUG- -5'
8989 5' -53.8 NC_002512.2 + 138527 0.69 0.924826
Target:  5'- -gGUCGCGUcGUCcagcccgucgagcAGCUGGCAGGaGCg -3'
miRNA:   3'- caCAGCGCAaUAG-------------UCGGCCGUUCgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.