Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8989 | 5' | -53.8 | NC_002512.2 | + | 140970 | 0.72 | 0.801448 |
Target: 5'- -gGUCGCGUggugaccgAUCGGaUCGGgGGGCACg -3' miRNA: 3'- caCAGCGCAa-------UAGUC-GGCCgUUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 144715 | 0.73 | 0.715891 |
Target: 5'- -cGUCGCGccuggGUCAGCUGGC--GCACu -3' miRNA: 3'- caCAGCGCaa---UAGUCGGCCGuuCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 149256 | 0.66 | 0.973338 |
Target: 5'- -cGcCGCGga--CGGCCGGaCGGGUACg -3' miRNA: 3'- caCaGCGCaauaGUCGGCC-GUUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 152416 | 0.69 | 0.908116 |
Target: 5'- cGUG-CGCGggAUCc-CCGGCGAcGCGCg -3' miRNA: 3'- -CACaGCGCaaUAGucGGCCGUU-CGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 152700 | 0.7 | 0.895435 |
Target: 5'- -cGUCGCGUccccgGUCGGggugCGGCGGGCAg -3' miRNA: 3'- caCAGCGCAa----UAGUCg---GCCGUUCGUg -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 156298 | 0.66 | 0.982603 |
Target: 5'- -cGUCGUGaaGUCGGCCGuGUc-GCACg -3' miRNA: 3'- caCAGCGCaaUAGUCGGC-CGuuCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 163832 | 0.67 | 0.967555 |
Target: 5'- -aGUC-UGgg--CAGCuCGGCGAGCACa -3' miRNA: 3'- caCAGcGCaauaGUCG-GCCGUUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 172018 | 0.7 | 0.867345 |
Target: 5'- -cGUCGCcugGUcCGGCCGGCA-GCAUg -3' miRNA: 3'- caCAGCGcaaUA-GUCGGCCGUuCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 174666 | 0.67 | 0.960936 |
Target: 5'- gGUGcCGCacgAUCAGCCGGUAccGGC-Cg -3' miRNA: 3'- -CACaGCGcaaUAGUCGGCCGU--UCGuG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 174854 | 0.66 | 0.973338 |
Target: 5'- uGUGcUCGUGUgacUCAGaaGGCAgauuuGGCACa -3' miRNA: 3'- -CAC-AGCGCAau-AGUCggCCGU-----UCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 184462 | 0.67 | 0.960936 |
Target: 5'- -aGUCGCcg---CGGCCGGCGccgccgucgAGCGCc -3' miRNA: 3'- caCAGCGcaauaGUCGGCCGU---------UCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 184533 | 0.89 | 0.111367 |
Target: 5'- -aGUCGCGggGUCAGCCGGC-GGCGCg -3' miRNA: 3'- caCAGCGCaaUAGUCGGCCGuUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 189171 | 1.09 | 0.006155 |
Target: 5'- cGUGUCGCGUUAUCAGCCGGCAAGCACc -3' miRNA: 3'- -CACAGCGCAAUAGUCGGCCGUUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 198543 | 0.66 | 0.975931 |
Target: 5'- --cUCGUGgUcgUAGCCGGCcaGGGCGCu -3' miRNA: 3'- cacAGCGCaAuaGUCGGCCG--UUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 199917 | 0.66 | 0.973338 |
Target: 5'- cUGUCGUccGUUcgCGGCCGGCcgcCGCu -3' miRNA: 3'- cACAGCG--CAAuaGUCGGCCGuucGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 200098 | 0.68 | 0.940466 |
Target: 5'- -cGUCGCGggGUC-GCCGG--GGUACu -3' miRNA: 3'- caCAGCGCaaUAGuCGGCCguUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 202828 | 0.73 | 0.745386 |
Target: 5'- cGUGUCGCaGUUgAUCGGCCaGUucAGCACg -3' miRNA: 3'- -CACAGCG-CAA-UAGUCGGcCGu-UCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 209138 | 0.67 | 0.964353 |
Target: 5'- -cGUCGUGggAgacgaCGGCGAGCACg -3' miRNA: 3'- caCAGCGCaaUagucgGCCGUUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 210980 | 0.66 | 0.973338 |
Target: 5'- uGUGUCGCGccugcgUGGCCGcGCA-GUACg -3' miRNA: 3'- -CACAGCGCaaua--GUCGGC-CGUuCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 217561 | 0.7 | 0.888067 |
Target: 5'- uUGUCGCGUUcgCgacggcgAGCCGGUccggcGGCGCc -3' miRNA: 3'- cACAGCGCAAuaG-------UCGGCCGu----UCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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